Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1345
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 54 1e-07
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533... 48 1e-05
05_04_0296 - 19943253-19944159,19944239-19945031,19945434-199454... 29 3.3
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 29 5.8
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 29 5.8
11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169... 28 7.6
05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868... 28 7.6
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +2
Query: 278 LVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFA 457
++SPY+ L+ ++IWR +T Y+ FL + +FL Y + LE F
Sbjct: 34 IISPYHLYLNPKLVVQHYEIWRLVTNFLYFR---KMDLDFLFHMFFLARYCKLLEENSFR 90
Query: 458 GKPADYFYMLLF 493
G+ AD+FYMLLF
Sbjct: 91 GRTADFFYMLLF 102
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 541 LMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
L + + ++YVW + N + +SF F A YLPW
Sbjct: 130 LSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPW 166
>05_01_0594 -
5337804-5337976,5338282-5338436,5338591-5338745,
5338864-5338992,5339096-5339189,5339293-5339366,
5339716-5339851,5341546-5341562
Length = 310
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/110 (26%), Positives = 52/110 (47%)
Frame = +2
Query: 278 LVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFA 457
+++P + L + + F +FQIWR T+ F+ +F I + Y +LE G F
Sbjct: 33 ILNPPFLALYYPFVFKKFQIWRLFTSFFFL---GKFSINFGIRLLMIARYGVQLEKGAFE 89
Query: 458 GKPADYFYMLLFNWVCCLSLDYLSNCQY*WTRWYSRYYMYGVSLIKM*LY 607
+ AD+ +M++F + L+L + + Y GV ++ M LY
Sbjct: 90 KRTADFLWMMIFGAISLLALSAIP---------FLDIYFLGVPMVSMLLY 130
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 550 PMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
PMV +LYVW + + +S + + ++ YLPW
Sbjct: 123 PMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPW 156
>05_04_0296 -
19943253-19944159,19944239-19945031,19945434-19945496,
19947086-19947182
Length = 619
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 233 LDDFYYCMSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTG 388
LD +Y+ + FG GL YYF+ YY F + +P L Y N G
Sbjct: 561 LDSYYWLV--FGLQGLNLIYYFVCVRYYTFKPLETVKPEEELELYRGNGNEG 610
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 314 YFFNQFQIWRPLT--ALFYYPINP 379
+ FN++Q WRP + LF YP +P
Sbjct: 226 FAFNRYQFWRPASYYKLFRYPFDP 249
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +2
Query: 221 FHQILDDFYYCMSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 367
F +D+++ + G + Y F +YFFN+ +I + ++ + Y+
Sbjct: 558 FQLCSEDYHWWWRAYLTAGSSALYLFAYAIFYFFNKLEITKLVSGILYF 606
>11_03_0226 -
11908455-11908562,11915971-11916240,11916463-11916946,
11917148-11918060,11918628-11919300
Length = 815
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 425 SCTKSNSLSGNEILCLDLLDSKTK 354
SCTKS +L GN +L ++DS K
Sbjct: 133 SCTKSTNLKGNGLLARRIVDSVAK 156
>05_03_0355 -
12885898-12886290,12886351-12886644,12886744-12886871,
12886952-12888482
Length = 781
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 425 SCTKSNSLSGNEILCLDLLDSKTK 354
SCTKS +L GN +L ++DS K
Sbjct: 143 SCTKSTNLKGNGLLARRIVDSVAK 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,879,739
Number of Sequences: 37544
Number of extensions: 424724
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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