Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1345
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)                   33   0.21 
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   33   0.27 
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_1368| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 712

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 19/58 (32%), Positives = 35/58 (60%)
 Frame = -1

Query: 250 IVKVIQYLVKNGTPLYQSRNSDIFQDFLIISLAQTDLLLHSTMS*ISVFRYFRLFSYF 77
           ++++I  ++  G   Y S+  +IF  F+++ L+ T+LLL +  + +SVFR  RL   F
Sbjct: 241 VLEMIINVISFGIMGYLSQLQNIFDGFVVV-LSVTELLLENGYARLSVFRSIRLLRIF 297


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/58 (32%), Positives = 34/58 (58%)
 Frame = -1

Query: 250 IVKVIQYLVKNGTPLYQSRNSDIFQDFLIISLAQTDLLLHSTMS*ISVFRYFRLFSYF 77
           ++++I  ++  G   Y S+  +IF  F ++ L+ T+LLL +  + +SVFR  RL   F
Sbjct: 498 VLEMIINVISFGIMGYLSQLQNIFDGF-VVGLSVTELLLENGYARLSVFRSIRLLRIF 554


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 566 TESTIGSINTGNLTSNPMINSTPN*TKACRNSQLASLQTCRSQVFESSCTKSNSLS 399
           T ST  ++     TS+P++ +T +   +   S +A+  T  +   ESS T +N+ S
Sbjct: 505 TNSTTSTLAEAVATSSPVLPTTTSVLTSSMESSMATTSTTSTPSLESSMTTNNTTS 560


>SB_1368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 475 IVSWLPCKHAGLKSLRVVVQKVTVYQEMKSCAWIYWIVKQSC 350
           +  WLPC HA LK    V  ++   Q M+    +     +SC
Sbjct: 29  LTDWLPCYHAELKGAEDVPNEIWHQQRMRDALILQDPEHESC 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,189,202
Number of Sequences: 59808
Number of extensions: 538342
Number of successful extensions: 1093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)