Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1345
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...   112   2e-25
U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    57   2e-08
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    57   2e-08
Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score =  112 bits (270), Expect = 2e-25
 Identities = 45/86 (52%), Positives = 60/86 (69%)
 Frame = +2

Query: 260 LFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRL 439
           L G+FG ++  +  L +    N+FQ WRPLTAL YYP+ P TGFH+L+ CYFLYNYS+ L
Sbjct: 26  LLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYPVTPQTGFHWLMMCYFLYNYSKAL 85

Query: 440 ETGMFAGKPADYFYMLLFNWVCCLSL 517
           E+  + G+ ADY +ML+FNW  C  L
Sbjct: 86  ESETYRGRSADYLFMLIFNWFFCSGL 111



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +1

Query: 541 LMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
           L++PMV+SVLYVWCQ+NKD IVSFWFG RF A YLPW
Sbjct: 120 LLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPW 156


>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 39/74 (52%)
 Frame = +2

Query: 281 VSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFAG 460
           V+P++   ++     ++Q WR +T+  ++      GF FL N  F Y Y   LE G F G
Sbjct: 34  VTPFHLYFNWELIIRKYQFWRLITSFCFFG---SFGFSFLFNMIFTYRYCMMLEEGSFRG 90

Query: 461 KPADYFYMLLFNWV 502
           + AD+ YM LF  V
Sbjct: 91  RRADFVYMFLFGAV 104



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 559 LSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
           + ++Y+W + N  + ++F+    F A YLPW
Sbjct: 124 IMLVYIWSRRNPMIQMNFFGVLTFTAPYLPW 154


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 39/74 (52%)
 Frame = +2

Query: 281 VSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFAG 460
           V+P++   ++     ++Q WR +T+  ++      GF FL N  F Y Y   LE G F G
Sbjct: 34  VTPFHLYFNWELIIRKYQFWRLITSFCFFG---SFGFSFLFNMIFTYRYCMMLEEGSFRG 90

Query: 461 KPADYFYMLLFNWV 502
           + AD+ YM LF  V
Sbjct: 91  RRADFVYMFLFGAV 104



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 559 LSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
           + ++Y+W + N  + ++F+    F A YLPW
Sbjct: 124 IMLVYIWSRRNPMIQMNFFGVLTFTAPYLPW 154


>Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical
           protein R05H5.2 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 450 CLQGSQLTISTCFCLIGCAVYHWITCQIASINGPDGTLGII 572
           CL+G +L IS   C       H  TC+  ++    GTL II
Sbjct: 24  CLRGDELMISHLSCRQRFLTIHADTCRPGNLPARPGTLNII 64


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 338 WRPLTALFYYPINPGTGFHFLINCYFL 418
           W+P+ +L +  ++  TGFH L+  +++
Sbjct: 556 WKPVDSLPFIDVSKSTGFHGLLRAFYV 582


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,066,271
Number of Sequences: 27780
Number of extensions: 421573
Number of successful extensions: 1125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)