Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1345
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    26   0.47 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +2

Query: 686 RWDNGAPRHSNWSLKHSSFXS---NPFKN 763
           RW NG P + N+ LK+    S   NP+ N
Sbjct: 69  RWKNGVPSNLNFFLKNDESESPKLNPYPN 97


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 289 RAHKPKFTKQTHTIVKVIQ 233
           R H+P F   T T+ K+I+
Sbjct: 879 RTHRPTFANLTQTLDKLIR 897


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 82  KKINENSEKPIFMTLYCVIINQFVPTK*SENL 177
           K  N  +  P+F T++ + I + +P +  ENL
Sbjct: 312 KAKNMENRFPLFTTVHRICIGETMPMELIENL 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,067
Number of Sequences: 438
Number of extensions: 5852
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)