Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1345
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29330.1 68417.m04191 Der1-like family protein / degradation ...    52   5e-07
At4g04860.1 68417.m00708 Der1-like family protein / degradation ...    52   6e-07
At4g21810.1 68417.m03155 Der1-like family protein / degradation ...    51   8e-07
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ...    31   0.90 
At1g55130.1 68414.m06296 endomembrane protein 70, putative simil...    31   0.90 
At5g56220.1 68418.m07016 expressed protein                             29   2.8  
At4g23160.1 68417.m03342 protein kinase family protein contains ...    29   4.8  
At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4 f...    28   6.4  
At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4 f...    28   8.4  

>At4g29330.1 68417.m04191 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 266

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 38/113 (33%), Positives = 55/113 (48%)
 Frame = +2

Query: 269 KFGLVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETG 448
           + GLV+P +  L       QFQIWR +T LF+     G   +F I    +  Y  +LE G
Sbjct: 30  QLGLVAPVHIALIPELVLKQFQIWRLITNLFFL---GGFSINFGIRLLMIARYGVQLEKG 86

Query: 449 MFAGKPADYFYMLLFNWVCCLSLDYLSNCQY*WTRWYSRYYMYGVSLIKM*LY 607
            F  + AD+ +M++F      +L  LS   + WT +       GVSL+ M LY
Sbjct: 87  PFERRTADFLWMMIFG---SFTLLVLSVIPFFWTPF------LGVSLVFMLLY 130



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 535 PVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
           P L   +V  +LY+W +   +  +S +     KA YLPW
Sbjct: 118 PFLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPW 156


>At4g04860.1 68417.m00708 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 244

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 26/72 (36%), Positives = 37/72 (51%)
 Frame = +2

Query: 278 LVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFA 457
           ++SPY   L+      Q+Q WR +T   Y+         F+ + +FL  Y + LE   F 
Sbjct: 34  IISPYNLYLNPTLVVKQYQYWRLVTNFLYFR---KMDLDFMFHMFFLARYCKLLEENSFR 90

Query: 458 GKPADYFYMLLF 493
           GK AD+ YMLLF
Sbjct: 91  GKTADFLYMLLF 102



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 529 KLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
           K+  L + +   ++YVW + N  + +SF     F A YLPW
Sbjct: 126 KIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPW 166


>At4g21810.1 68417.m03155 Der1-like family protein / degradation in
           the ER-like family protein contains Pfam profile:
           PF04511 Der1-like family
          Length = 244

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 26/72 (36%), Positives = 36/72 (50%)
 Frame = +2

Query: 278 LVSPYYFILDFYYFFNQFQIWRPLTALFYYPINPGTGFHFLINCYFLYNYSQRLETGMFA 457
           ++SPY   L+      Q+Q WR +T   Y+         FL + +FL  Y + LE   F 
Sbjct: 34  IISPYNLYLNPTLVVKQYQFWRLVTNFLYFR---KMDLDFLFHMFFLARYCKLLEENSFR 90

Query: 458 GKPADYFYMLLF 493
           GK  D+ YMLLF
Sbjct: 91  GKTTDFLYMLLF 102



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 529 KLPVLMDPMVLSVLYVWCQLNKDVIVSFWFGTRFKAMYLPW 651
           K+  L + +   ++YVW + N  + +SF     F A YLPW
Sbjct: 126 KIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPW 166


>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 469

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 259 FVW*IWACEPLLFYTGFLLFLQSISDMASINSFVLLSNKSRHRISFPDKLLL 414
           + W +W C  L F+T +     S+ D +S +S  LLSN  +   S P + L+
Sbjct: 47  YTWILWFCLSLYFFTSYF----SVEDQSSPSSIRLLSN-HKTSSSLPSRALI 93


>At1g55130.1 68414.m06296 endomembrane protein 70, putative similar
           to multispanning membrane protein GI:2276460 from [Homo
           sapiens]
          Length = 637

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 221 FHQILDDFYYCMSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 367
           F    +D+ +C   +   G  S Y F+   +YFF + +I + ++ + Y+
Sbjct: 553 FQLCSEDYNWCWRAYLTSGSSSLYLFLYSVFYFFTKLEISKLVSGVLYF 601


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 413 FLYNYSQRLETGMFAGKPADYFYMLLFNWVCCLSLDYLSNCQ 538
           F Y YSQR +  ++ G  A YF   L N    L LD  ++ +
Sbjct: 459 FAYRYSQRYKMVLWVGGEARYFRQNLLNLSFSLGLDVSADAE 500


>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 51  HNDHTIFMXXXXXXXXXXXTDIYDIVLCNNKSVCANEIIRKSWKMSEFRD 200
           H+DHT F+             + DI++C+N     +E+  +     + RD
Sbjct: 263 HSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312


>At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4
           family;
          Length = 644

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 221 FHQILDDFYYCMSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 367
           F    +D+ +    +   G  + Y F+   +YFF + QI + ++A+ Y+
Sbjct: 560 FQLCSEDYLWWWRSYLTSGSSAVYLFLYAAFYFFTKLQITKLVSAMLYF 608


>At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4
           family;
          Length = 648

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 221 FHQILDDFYYCMSLFGKFGLVSPYYFILDFYYFFNQFQIWRPLTALFYY 367
           F    +D+ +    +   G  + Y F+   +YFF + QI + ++A+ Y+
Sbjct: 564 FQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLQITKLVSAMLYF 612


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,828
Number of Sequences: 28952
Number of extensions: 374441
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)