Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1336
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    29   0.050
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.3  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   4.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   4.4  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 0.050
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 374 NYSAPNLYSLFPPARQASSPEPRSPLAL 457
           N+  P    L  P+  +SSPEPRSP +L
Sbjct: 273 NFRVPQHQVLQSPSSTSSSPEPRSPESL 300


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 374 NYSAPNLYSLFPPARQASSPEPRSPLALE 460
           ++ AP      PP R+  SP+  SP+  E
Sbjct: 61  HHKAPIRPVALPPKREIPSPKRSSPILAE 89


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 103 KRVASNASPSAVTRYGVGAGSGYSSTLTSKRY 8
           KR  S+A+ +++    +  G  YS+T+T  R+
Sbjct: 99  KRTLSSATQASIEIDSLFDGIDYSTTITRARF 130


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 103 KRVASNASPSAVTRYGVGAGSGYSSTLTSKRY 8
           KR  S+A+ +++    +  G  YS+T+T  R+
Sbjct: 99  KRTLSSATQASIEIDSLFDGIDYSTTITRARF 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,596
Number of Sequences: 336
Number of extensions: 3373
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)