Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1336
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    28   1.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   3.6  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.2  

>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 464 IFPAPKVIEVLVNWLVWPVGITNTN*VLNNYRYCRCHVFQGPEMTDRSNFFA 309
           IF  P  IE+  +  + P  I +    LN +R C  ++ +   + DR+ FFA
Sbjct: 102 IFDMPGQIELYTHVPILPALIRHLQVTLN-FRPCAVYLLESQFLVDRTKFFA 152


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 407 PPARQASSPEPRSPLALEISSEIVTSMNG 493
           PPA  A  PE RSP+ L +  EI+  MNG
Sbjct: 402 PPASFA--PE-RSPITLPLDPEIIREMNG 427


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 332 SSRVPERRDIGNSDNYSAPNLYSLFPPARQASSPEPRSPLAL 457
           S+   E  D G+S         S +P +R  S+P P SP+++
Sbjct: 282 SASTAESLDDGHSATTIQQGDVSSYPLSRSVSTPVPMSPISI 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,296
Number of Sequences: 5004
Number of extensions: 56086
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)