Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1336
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1143 - 34862005-34862370,34862494-34862628,34862742-348629... 30 2.1
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 29 3.7
05_04_0154 - 18549806-18550161,18550271-18550907 29 3.7
06_01_0571 - 4038319-4040877,4040962-4041012 29 4.9
03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669 29 4.9
03_02_0373 - 7865708-7866310,7869547-7870443 29 4.9
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527... 28 6.5
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 28 8.6
07_03_1248 - 25165929-25166891,25169159-25169473 28 8.6
01_06_1465 - 37551996-37552061,37552206-37552277,37552373-37552987 28 8.6
>01_06_1143 -
34862005-34862370,34862494-34862628,34862742-34862992,
34863192-34863243,34863408-34863694,34864030-34864182,
34865393-34865889,34866173-34866241,34867006-34867074,
34867486-34867560,34869341-34869412,34869499-34869570,
34869664-34869807,34870321-34870416,34870736-34870807,
34871081-34871152,34871683-34871830,34872609-34872708
Length = 909
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 142 TADSAGETASVIPKRVASNASPSAVTR 62
TA +GE A VI +R++S++SP V R
Sbjct: 791 TAYQSGEIAGVIDERISSSSSPECVAR 817
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 386 PNLYSLFPPARQASSPEPRSPLALEISSEIVTSMNGHR-DLE*SYSRPRPRL*TPTDASF 562
P +S + P + P P P L SS I++S GH + S + +P T +++
Sbjct: 753 PTQHSAYNPEMTLNLPPPPPPPTLPPSSAILSSQVGHSLPTQMSQQQYQPEQYYMTQSNY 812
Query: 563 SQIKSESAVN 592
Q+ + S+ N
Sbjct: 813 GQLATVSSSN 822
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 290 RGAD--TTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFPPARQASSPEPR 442
RG D T +R +W P++R ER+ + + S+P S FP A AS+ +PR
Sbjct: 132 RGFDCPTHVRSTWV-PAARRRERQQLAGAA--SSPPTSSAFPAATTASAKKPR 181
>06_01_0571 - 4038319-4040877,4040962-4041012
Length = 869
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = +2
Query: 251 AQDSMKVVGPLGRRGADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFPPARQASS 430
A D+ K V L AD LR S +VPE+ D + L LF P R S+
Sbjct: 439 AADAEKKVHALIDSYADRGLR-SLGVSYQQVPEKSKDSGGDPWQFIGLLPLFDPPRHDSA 497
Query: 431 PEPRSPLALEISSEIVT 481
R L L ++ +++T
Sbjct: 498 ETIRRALHLGVNVKMIT 514
>03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669
Length = 457
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 302 TTLRRSWSDPSSRVPERRDIGNSDNY-SAPNLYSLFPPARQASS 430
++L R + PSS V + R +GN+D + S P SL P SS
Sbjct: 156 SSLERLLTSPSSCVSDSRGVGNADGFPSLPWASSLEKPLTSPSS 199
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 314 RSWSDPSSRVPERRDIGNSDNYSAPN 391
R+W+DP +PE R IGN NY N
Sbjct: 405 RAWNDPDKFMPE-RFIGNDINYLGQN 429
>02_05_1079 +
33950290-33950337,33950418-33952586,33952690-33952780,
33952955-33953435,33954249-33954345
Length = 961
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +2
Query: 251 AQDSMKVVGPLGRRGADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFPPARQASS 430
++D+ K V L + AD LR S +VPE+ + + L LF P R S+
Sbjct: 438 SKDAEKKVHTLIDQYADRGLR-SLGVSYQKVPEKSKESEGEPWQFVGLLPLFDPPRHDSA 496
Query: 431 PEPRSPLALEISSEIVT 481
R L L ++ +++T
Sbjct: 497 ETIRRALHLGVNVKMIT 513
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +2
Query: 374 NYSAPNLYSLFPPARQ--ASSPEPRSPLALEISSEIVTSMNGHRDL 505
N ++ ++ + PP R +++P PR+P+A ++S V + + R+L
Sbjct: 242 NLASSSVAAASPPPRNLVSTTPVPRNPIAANVASSSVAAASPPRNL 287
>07_03_1248 - 25165929-25166891,25169159-25169473
Length = 425
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 338 RVPERRDIGNSDNYSAPNLYSLFPPARQASSP 433
++ E +D G++DN +PN + P+R S P
Sbjct: 267 QIEEIKDDGSNDNVDSPNFNCVQDPSRSVSFP 298
>01_06_1465 - 37551996-37552061,37552206-37552277,37552373-37552987
Length = 250
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 148 ELT-ADSAGETASVIPKRVASNASPSAVTRYGVGAGSGYSSTL 23
E+T A A V+P A+ A+P+ V G GAG+G TL
Sbjct: 84 EITGAGVAAAAGGVVPPAAAAAAAPAVVA--GAGAGTGAEMTL 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,929
Number of Sequences: 37544
Number of extensions: 403667
Number of successful extensions: 1326
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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