Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1336
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6094| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_22616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             28   6.6  

>SB_6094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 278 PLGRRGADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFP-PARQASSPEPRSPLA 454
           P      D+T+  S  D + RV   R    +   +AP   +  P PAR  S+P P++P A
Sbjct: 34  PAAHNSNDSTVSDSSEDYTPRVSRPRPQPRARARAAPADTTPKPSPARNRSTPTPKTPAA 93

Query: 455 LEISSEIVTS 484
           L +  +I+ S
Sbjct: 94  L-LKQQILES 102


>SB_22616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 14  LRCQS-TGVSGTGTDPVSSNSTRRGIRSHSFWYNRGCFTSRIRS 142
           LR Q+ T   G G   V++N  + G+R+H F  N   +  R RS
Sbjct: 104 LRFQTKTDTWGRGLKQVTTNGIKNGVRAHEFLENGFFYVLRARS 147


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 329  PSSRVPERRDIGNS-DNYSAPNLYSLFPPARQASSPEPRSP 448
            PS+R+P+ R   +S D+  +  L  + PP +    P+P+ P
Sbjct: 3155 PSTRIPDVRYRSSSQDSRDSDELPDILPPPKPPIKPKPKVP 3195


>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 643 LFHSTVHFEIVALDCTSVHGTFTFYLRKRSVGR 545
           + +ST+ FEI+A    S++ TF+ +L   S G+
Sbjct: 111 IVNSTLEFEILASQIKSLNTTFSLHLSNHSYGK 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,246,473
Number of Sequences: 59808
Number of extensions: 437227
Number of successful extensions: 1047
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)