Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1336
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002914-1|AAH02914.1|  358|Homo sapiens WIPF1 protein protein.        30   7.3  
BC067089-1|AAH67089.1|  967|Homo sapiens NUP210 protein protein.       30   9.6  
AK026042-1|BAB15332.1|  465|Homo sapiens protein ( Homo sapiens ...    30   9.6  

>BC002914-1|AAH02914.1|  358|Homo sapiens WIPF1 protein protein.
          Length = 358

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 341 VPERRDIGNSDNYSAPNLYSLFPPARQASSPEPRSP 448
           +P+ R   N DN+S  +   L PP  +++S +P SP
Sbjct: 108 MPKLRSTANRDNHSGGSRPPLLPPGGRSTSAKPFSP 143


>BC067089-1|AAH67089.1|  967|Homo sapiens NUP210 protein protein.
          Length = 967

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 201 WNLHP-KFVQRGRKADTDTN*LRILLVKQPRLYQNEWLLMPLRVLLLDTGSVPVPDTPVL 25
           W L P KF Q     DTD+  L +      R YQ  W+L+  + L     ++ V + P L
Sbjct: 671 WILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVIALSVGNKPSL 730


>AK026042-1|BAB15332.1|  465|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22389 fis, clone HRC07681. ).
          Length = 465

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 201 WNLHP-KFVQRGRKADTDTN*LRILLVKQPRLYQNEWLLMPLRVLLLDTGSVPVPDTPVL 25
           W L P KF Q     DTD+  L +      R YQ  W+L+  + L     ++ V + P L
Sbjct: 169 WILEPSKFFQNVTAEDTDSIGLALFAPHSSRNYQQHWILVTCQALGEQVIALSVGNKPSL 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,852,091
Number of Sequences: 237096
Number of extensions: 2151618
Number of successful extensions: 4902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4900
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)