Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1336
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 30 1.9
U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 29 3.3
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 29 3.3
Z81571-6|CAB04616.1| 460|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 28 7.7
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 28 7.7
AC025726-34|AAY43986.1| 308|Caenorhabditis elegans Hypothetical... 28 7.7
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +2
Query: 278 PLGRRGADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFPPARQASSPEPRSPLAL 457
PL G+ S P+S+VP RR S Y PN + F P R + PL++
Sbjct: 98 PLSHTGSTPEPTEIISKPTSKVPSRR-ASYSTGY--PN-HETFAPIRWVKETDVDDPLSI 153
Query: 458 EISSEIVTSMNGHRDLE*SYSRPRP 532
S I +S + ++ SR P
Sbjct: 154 PTMSPIGSSGSSEANIGMISSRSAP 178
>U53338-1|AAA96189.2| 152|Caenorhabditis elegans Hypothetical
protein C05E11.6 protein.
Length = 152
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 314 RSWSDPSSRVPERRDIGNSDNY-SAPNLYSLFPPARQASSPEPRSPLAL 457
RS P++RV R+D +D + S ++S P +R PEP +P+ L
Sbjct: 87 RSHFAPNTRVECRKDCFQNDTFQSCMKIFSRVP-SRPVQQPEPTAPIPL 134
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 329 PSSRVPERRDIGNSDNYSAPNLYSLFPPARQASSPEPRSPLALEISSE 472
P+S P+RR + N++ S + P ++ +SP P P A +S++
Sbjct: 598 PTSPTPQRRPLNNTEVPSPVTYRKISAPVQKVTSPAP--PAARSVSTD 643
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 400 VIPTGQTSQFTRTSITFGAGNIFGNCYVHEWSPRLGIKLFSTSPPAMNSDRRFFFADKK 576
+I QT + + +I G +F VH+ RLGIKL + + + FFAD+K
Sbjct: 231 LIAVSQTPAYPK-NIVRGLSVVFNEAAVHDTCKRLGIKLIVRAHQMIPEGFK-FFADQK 287
>Z81571-6|CAB04616.1| 460|Caenorhabditis elegans Hypothetical
protein M01G12.7 protein.
Length = 460
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 171 PVGQIWDADSIADLLDENSSGDFTPTKLKIL*K*SDH*DDEVLIQRCEEVGAIRHL 338
PV + W+ I L EN+ D T K KI+ + EV RC +G RHL
Sbjct: 356 PVREEWERSLIVKYLSENTESDETKAK-KIVDRLGSGIGPEVAAVRC--IGQPRHL 408
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 371 DNYSAPNLYSLFPPARQ---ASSPEPRSPLALEISSEIVTSMNGHRDLE*SYSR 523
+NYS +L + AR+ ASS RSP+A + S + M R+L+ S +R
Sbjct: 172 NNYSLTSLQTPTATARRLRTASSTARRSPIAEAVDSPTMKFMRSERELKQSKAR 225
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 660 HMNXIRYFTALFTLKS*RSTVHLFTALSLFICEKEA 553
H ++YFTAL ++ V L A+ FI KEA
Sbjct: 286 HSLVLKYFTALIDIRGLEVDVALRKAMQFFILPKEA 321
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 371 DNYSAPNLYSLFPPARQ---ASSPEPRSPLALEISSEIVTSMNGHRDLE*SYSR 523
+NYS +L + AR+ ASS RSP+A + S + M R+L+ S +R
Sbjct: 172 NNYSLTSLQTPTATARRLRTASSTARRSPIAEAVDSPTMKFMRSERELKQSKAR 225
>AC025726-34|AAY43986.1| 308|Caenorhabditis elegans Hypothetical
protein Y71G12B.30 protein.
Length = 308
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 451 GAGNIFGNCYVHEWSPRLGIKLFSTSPPAMNSDRRFFFADKK 576
GAG++FG V E++ + + L + + D FFADKK
Sbjct: 234 GAGHVFGEATVKEFNEKFKLDLIVRAHQVV-MDGYEFFADKK 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,923
Number of Sequences: 27780
Number of extensions: 327181
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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