Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1336
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.24 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   5.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  LEYPEPAPTPYRVTALGEALEATRFG 107
           +E     PTP+   A+ EALEA R G
Sbjct: 562 IELSRSNPTPWSEDAMTEALEAVRLG 587


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 374 NYSAPNLYSLFPPARQASSPEPRSPLALEISSEIVTSMNGHRDLE*SYSR 523
           N+   N  +L P A Q+ S   R P    +  +I++    ++ L+  YS+
Sbjct: 394 NFDFQNKNNLIPSALQSYSTSMRDPAFYMLYQKILSYFLRYKKLQPQYSQ 443


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 374 NYSAPNLYSLFPPARQASSPEPRSPLALEISSEIVTSMNGHRDLE*SYSR 523
           N+   N  +L P A Q+ S   R P    +   I++    ++ L+  YS+
Sbjct: 394 NFDFQNKNNLIPSALQSYSTSMRDPAFYMLYQNILSYFLRYKKLQPQYSQ 443


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 32  GVSGTGTDPVSSNSTRRGIRSHSFWY 109
           G+ G    PV++N     + SHS +Y
Sbjct: 253 GIFGMALSPVTNNLYYSPLTSHSLYY 278


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 296 ADTTLRRSWSDPSSRVPE 349
           AD  L +SW D   R+PE
Sbjct: 53  ADIFLAQSWRDSRLRLPE 70


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 374 YRYCRCHVFQGPE 336
           Y+Y +CH  Q PE
Sbjct: 126 YQYVQCHYKQNPE 138


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 32  GVSGTGTDPVSSNSTRRGIRSHSFWY 109
           G+ G    PV++N     + SH  +Y
Sbjct: 250 GICGMALSPVTNNLYYSPLASHGLYY 275


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 53   DPVSSNSTRRGIRSHSFW 106
            D +   +  R IRSHS W
Sbjct: 1665 DRIKRGTVIRSIRSHSTW 1682


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 458 PAPKVIEVLVNWLVWP 411
           PA ++I +  +WLV+P
Sbjct: 26  PAEELIHIPEHWLVYP 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,124
Number of Sequences: 438
Number of extensions: 3803
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)