Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1336
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17540.2 68415.m02030 expressed protein 32 0.33
At2g17540.1 68415.m02029 expressed protein 32 0.33
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 31 0.58
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 31 0.58
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 31 0.58
At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family... 28 5.4
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-... 28 7.2
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-... 28 7.2
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 27 9.5
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 27 9.5
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 27 9.5
>At2g17540.2 68415.m02030 expressed protein
Length = 275
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 380 SAPNLYSLFPPARQASSPEPRSPLALEISSEIVTSMNGHRD 502
+A L++ FP A S EPR A+ S ++T +GHR+
Sbjct: 115 NALELFASFPAAETVSCKEPRLIRAINNSPRVLTDCSGHRN 155
>At2g17540.1 68415.m02029 expressed protein
Length = 275
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 380 SAPNLYSLFPPARQASSPEPRSPLALEISSEIVTSMNGHRD 502
+A L++ FP A S EPR A+ S ++T +GHR+
Sbjct: 115 NALELFASFPAAETVSCKEPRLIRAINNSPRVLTDCSGHRN 155
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 293 GADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFPPARQASSPEPRSP 448
GA + + SD S V RD G + +AP S PP Q ++PE SP
Sbjct: 287 GAPPSYEEAVSDSRSPVYSERDGGETPQVTAPGAAS--PPPPQVAAPEAASP 336
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 293 GADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFPPARQASSPEPRSP 448
GA + + SD S V RD G + +AP S PP Q ++PE SP
Sbjct: 287 GAPPSYEEAVSDSRSPVYSERDGGETPQVTAPGAAS--PPPPQVAAPEAASP 336
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 293 GADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNLYSLFPPARQASSPEPRSP 448
GA + + SD S V RD G + +AP S PP Q ++PE SP
Sbjct: 287 GAPPSYEEAVSDSRSPVYSERDGGETPQVTAPGAAS--PPPPQVAAPEAASP 336
>At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; contains some similarity to
transcription factor [Danio rerio]
gi|15617376|emb|CAC69871
Length = 367
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 386 PNLYSLFPPARQASSPEPRSPLALEISSEIVTSMNGHRDLE*SYSRPRPRL*TPT 550
P+ ++ PP A+ P+ +SP L+ SS ++T + + ++ S S L TP+
Sbjct: 218 PHQPTIAPPVAAAAPPQIQSPPPLQSSSPLMTLFDNNPEVISSNSNIHTDLVTPS 272
>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1648
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 511 KLFSTSPPA-MNSDRRFFFAD-KK*KCREQMYSRALRFQSEQCCEITNSI 654
KL ST+P + ++SD+ FFF D C+ + R LR S ++S+
Sbjct: 11 KLLSTTPSSVLSSDKNFFFVDFVGLYCKSKRTRRRLRGDSSSSSRSSSSL 60
>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1622
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 511 KLFSTSPPA-MNSDRRFFFAD-KK*KCREQMYSRALRFQSEQCCEITNSI 654
KL ST+P + ++SD+ FFF D C+ + R LR S ++S+
Sbjct: 11 KLLSTTPSSVLSSDKNFFFVDFVGLYCKSKRTRRRLRGDSSSSSRSSSSL 60
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 248 KAQDSMKVVGPLGRRGADTTLRRSWSDPSSRVPERRDIGNSDNYSAPNL-YSLF---PPA 415
K DS+ V LGR G D R +S P P+ G+S + SAP Y + P +
Sbjct: 49 KKSDSLPVFDDLGRDGDDLLFRDVFSGPP---PKYGSSGDSRSPSAPAFDYDVMFKEPKS 105
Query: 416 RQASS 430
+ ASS
Sbjct: 106 KSASS 110
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = +2
Query: 386 PNLYSLFPPARQAS----SPEPRSPLALEISSEIVTSMNGHRDLE*SYSRPRPRL*TPTD 553
PN YS PP R AS SP P SP ++S V S S P PR P
Sbjct: 85 PNPYSASPPPRPASPRVASPRPTSP---RVASPRVPSPRAEVPRTLSPKPPSPRAEVPRS 141
Query: 554 AS 559
S
Sbjct: 142 LS 143
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = +2
Query: 386 PNLYSLFPPARQAS----SPEPRSPLALEISSEIVTSMNGHRDLE*SYSRPRPRL*TPTD 553
PN YS PP R AS SP P SP ++S V S S P PR P
Sbjct: 84 PNPYSASPPPRPASPRVASPRPTSP---RVASPRVPSPRAEVPRTLSPKPPSPRAEVPRS 140
Query: 554 AS 559
S
Sbjct: 141 LS 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,751,712
Number of Sequences: 28952
Number of extensions: 307267
Number of successful extensions: 884
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -