Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1334
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 113 1e-26
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 112 2e-26
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 0.90
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 4.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.3
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 24 8.4
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 8.4
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 24 8.4
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 113 bits (271), Expect = 1e-26
Identities = 65/117 (55%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Frame = -1
Query: 418 KDPKRLFXGNAL---LXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKS 248
KDPKRLF GNA+ L G T K D L ED L + KS
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYV-LALRIED--FLERRLQTQVFKLGLAKS 121
Query: 247 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 77
IHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 122 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 112 bits (270), Expect = 2e-26
Identities = 65/120 (54%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Frame = -1
Query: 418 KDPKRLFXGNAL---LXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKS 248
KDPKRLF GNA+ L G + K D L ED L + KS
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYV-LALRIED--FLERRLQTQVFKLGLAKS 121
Query: 247 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 68
IHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q
Sbjct: 122 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181
Score = 66.9 bits (156), Expect = 1e-12
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = -2
Query: 375 RLVRIGVLXXKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 256
RLVR+G+L +MKLDYVL L+IEDFLERRLQTQVFK GL
Sbjct: 79 RLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGL 118
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.5 bits (58), Expect = 0.90
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 339 MKLDYVLGLKIEDFLERRLQTQVFKAGLXSPSIMPEF 229
+++D L + +E FL++ TQ+ L +P I+ EF
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPC-LIAPEILLEF 167
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 185 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 84
HP + GL Q H + ++ W SSW ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 6.3
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 79 GGSSS*HVQDDLHRMEISERSQCACQSPGAQ*MMG---CSQLACGHEY-AFAGSKFWHDG 246
G S S ++++L ++ +S G Q +G + L + + + AG+ ++D
Sbjct: 2027 GHSDSAWIEENLSDLKFLLEKSLENESVGVQSAIGNFVSTILTLSNTHPSIAGNPIFNDI 2086
Query: 247 WTXQASFEHLRLQTTLQ 297
WT AS+ RLQ+ Q
Sbjct: 2087 WTSIASWTERRLQSCSQ 2103
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = -3
Query: 161 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGW 63
G + A +L ++S W+ +W +E++ W
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKW 415
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 8.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 246 MDXPGQL*TPASADDAPRSPQSSDQAHNRVSSV 344
+D P + TPA DA SPQS H + V
Sbjct: 28 LDTPLAIHTPAKGFDADLSPQSLYDLHTVTTPV 60
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 253 KSIHHARILIRQRHIRVRKQVVNIPSFIVRL 161
+S+ H R L +H+R+ N P+ I +L
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKL 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,318
Number of Sequences: 5004
Number of extensions: 30302
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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