Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1334
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 111 2e-25
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 111 2e-25
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 111 2e-25
07_03_1357 - 25982861-25983068,25983354-25983361 61 3e-10
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 45 3e-05
03_06_0038 + 31227349-31227621,31228120-31228212,31229439-312295... 31 0.28
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 27 8.1
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 111 bits (268), Expect = 2e-25
Identities = 58/115 (50%), Positives = 72/115 (62%)
Frame = -1
Query: 418 KDPKRLFXGNALLXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKSIHH 239
K+P+R+F G ALL Y ++ L ++ KSIHH
Sbjct: 67 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 126
Query: 238 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 74
AR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 127 ARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 111 bits (268), Expect = 2e-25
Identities = 58/115 (50%), Positives = 72/115 (62%)
Frame = -1
Query: 418 KDPKRLFXGNALLXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKSIHH 239
K+P+R+F G ALL Y ++ L ++ KSIHH
Sbjct: 90 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 149
Query: 238 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 74
AR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 150 ARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 111 bits (268), Expect = 2e-25
Identities = 58/115 (50%), Positives = 72/115 (62%)
Frame = -1
Query: 418 KDPKRLFXGNALLXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKSIHH 239
K+P+R+F G ALL Y ++ L ++ KSIHH
Sbjct: 283 KNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHH 342
Query: 238 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 74
AR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 343 ARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 61.3 bits (142), Expect = 3e-10
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -1
Query: 208 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 83
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = -2
Query: 417 RTPRDCSKVMPFYXRLVRIGVLXXKQMKLDYVLGLKIEDFLERRLQTQVFKAG 259
+ PR + + R G+L Q KLDYVL L +E+FL+ RLQT VFK G
Sbjct: 56 KNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNG 108
Score = 31.9 bits (69), Expect = 0.22
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -1
Query: 418 KDPKRLFXGNALLXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKSIHH 239
K+P+R+F G ALL Y ++ L ++ KSIHH
Sbjct: 56 KNPRRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHH 115
Query: 238 ARILIRQRHI 209
+LIRQ HI
Sbjct: 116 DHVLIRQHHI 125
>03_06_0038 +
31227349-31227621,31228120-31228212,31229439-31229575,
31229953-31231030,31231757-31232374
Length = 732
Score = 31.5 bits (68), Expect = 0.28
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 364 YWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKSIHHARI 230
+W KTD RL S+ +L S D +W SIHH ++
Sbjct: 111 HWYRLYKTDNQRLSPDSQQVSVLAESHCDLASGNWKEISIHHKKM 155
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 235 RILIRQRHIRVRKQVVN--IPSFIVRLDSGKHIDFSLKSPFG 116
R L+ + I +R +N IPS+I +D+ KH+D S G
Sbjct: 281 RELVSMKTIILRNCSINGSIPSYIGNMDNLKHLDLSFNKLTG 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,299
Number of Sequences: 37544
Number of extensions: 230562
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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