Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1334
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   7e-30
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   6.3  
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  126 bits (304), Expect = 7e-30
 Identities = 71/120 (59%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
 Frame = -1

Query: 418 KDPKRLFXGNALLXSS---GSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKS 248
           KDP+RLF GNALL      G    +  K D   L    ED   L         +    KS
Sbjct: 63  KDPRRLFEGNALLRRLVRIGVLDESRKKLDYV-LGLRIED--FLERRLQTQVFKLGLAKS 119

Query: 247 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 68
           IHHAR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++KGQ
Sbjct: 120 IHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQ 179



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 35/54 (64%), Positives = 39/54 (72%)
 Frame = -2

Query: 417 RTPRDCSKVMPFYXRLVRIGVLXXKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 256
           + PR   +      RLVRIGVL   + KLDYVLGL+IEDFLERRLQTQVFK GL
Sbjct: 63  KDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGL 116


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -1

Query: 412  PKRLFXGNA-LLXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWP-GKSIHH 239
            P+ L  G A  +   G   S       T   AW+ + G  GAS A   + SWP G + H 
Sbjct: 935  PEPLLFGEADCIQPLGLSSSLITDNQLTASSAWNNERGKYGASRARLNLTSWPQGWTAHE 994

Query: 238  A 236
            A
Sbjct: 995  A 995


>SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 211 YAFAGSKFWHDGWTXQ--ASFEHLRLQTTLQEVLNLQTKHIIEFHLFXXQYSNTNQTTV 381
           YA A SK  HDG   +   +  HL     +++V +L   ++I   L     +NT+ TT+
Sbjct: 229 YALAISKGDHDGAIQEYIKTIGHLEPSYVIRKVSHLDLSYVIRKALHEHGLANTDHTTL 287


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -3

Query: 239  CQNFDPAKAYSCPQASCEHP-IIYCAPGLWQAH*LLSEISIRWRSSWTCQEEEPPQG 72
            C NFD    + C   S  H   IYC  G       L  +++     W C+ + P  G
Sbjct: 953  CMNFDGG--FGCRPGSESHAGQIYCCLGALSITHSLHHVNVDMLGWWLCERQLPSGG 1007


>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 340 DETRLCAWSED*GLLGASSADAGVQSW 260
           D  + CAWS +   + +SSAD  V  W
Sbjct: 89  DRVKSCAWSPNGEYVASSSADGRVTLW 115


>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 130 SERSQCACQSPGAQ*MMGCSQLACGHE 210
           S +SQ  C S     ++GC+QL C H+
Sbjct: 226 STQSQLKCYSGHVIPILGCAQLTCKHK 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,077
Number of Sequences: 59808
Number of extensions: 259084
Number of successful extensions: 555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)