Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1334
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   122   1e-28
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    33   0.11 
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   1.8  
U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical p...    27   4.1  
Z22178-4|CAA80156.1|  359|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    26   9.5  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    26   9.5  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    26   9.5  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    26   9.5  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    26   9.5  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  122 bits (293), Expect = 1e-28
 Identities = 71/119 (59%), Positives = 79/119 (66%), Gaps = 3/119 (2%)
 Frame = -1

Query: 418 KDPKRLFXGNALLX---SSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKS 248
           KDPKRLF GNALL      G    T  K D   L    ED   L         +    KS
Sbjct: 65  KDPKRLFEGNALLRRLVKIGVLDETKMKLDYV-LGLKVED--FLERRLQTQVFKLGLAKS 121

Query: 247 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 71
           IHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 122 IHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 184 CSQLACGHEYAFAGSKFWHDGW-TXQASFEHLRLQTTLQEVLNL 312
           C +  CG E+ F   K WH+G  T   +FE L+ + T  E+ +L
Sbjct: 152 CQRPGCGREFCFKCRKVWHEGTRTCSKTFEQLK-KITENEINDL 194


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 181 GCSQLACGHEYAFAGSKFWH 240
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK177.1 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 283 QTTLQEVLNLQTKHIIEFHLFXXQYSN--TNQTTVEG 387
           QT +QEV +  ++ I E+ +    YSN  TNQ T +G
Sbjct: 389 QTNIQEVQSEDSEGIYEYFVDQPNYSNQGTNQGTCQG 425


>Z22178-4|CAA80156.1|  359|Caenorhabditis elegans Hypothetical
           protein F54C8.4 protein.
          Length = 359

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 290 VVCRRRCSKLAWXVHPSCQNFDPAKAYS 207
           ++CR    +L W  H +   F+ A+ YS
Sbjct: 141 LICRFLIDRLGWSSHEAIDAFEQARGYS 168


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 253 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 125
           +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = -3

Query: 251 VHPSCQNFDP------AKAYSCPQASCEHPII 174
           VH   QNFD       AKA S PQ + EHP I
Sbjct: 779 VHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = -3

Query: 251 VHPSCQNFDP------AKAYSCPQASCEHPII 174
           VH   QNFD       AKA S PQ + EHP I
Sbjct: 779 VHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = -3

Query: 251 VHPSCQNFDP------AKAYSCPQASCEHPII 174
           VH   QNFD       AKA S PQ + EHP I
Sbjct: 779 VHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = -3

Query: 251 VHPSCQNFDP------AKAYSCPQASCEHPII 174
           VH   QNFD       AKA S PQ + EHP I
Sbjct: 779 VHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = -3

Query: 251 VHPSCQNFDP------AKAYSCPQASCEHPII 174
           VH   QNFD       AKA S PQ + EHP I
Sbjct: 779 VHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,294,906
Number of Sequences: 27780
Number of extensions: 185084
Number of successful extensions: 475
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)