Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1334
         (421 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   114   3e-26
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   113   6e-26
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.55 
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   2.2  
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    27   5.2  
At1g12160.1 68414.m01408 flavin-containing monooxygenase family ...    27   6.8  
At1g12130.1 68414.m01405 flavin-containing monooxygenase family ...    27   6.8  
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ...    26   9.0  
At1g62560.1 68414.m07058 flavin-containing monooxygenase family ...    26   9.0  
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ...    26   9.0  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  114 bits (274), Expect = 3e-26
 Identities = 64/119 (53%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
 Frame = -1

Query: 418 KDPKRLFXGNALLXSSGSYW---STXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKS 248
           K+P+R+F G ALL     Y     T  K D   L    E+   L         +S   KS
Sbjct: 67  KNPRRIFEGEALLRRMNRYGLLDETQNKLDYV-LALTVEN--FLERRLQTIVFKSGMAKS 123

Query: 247 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 71
           IHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R G
Sbjct: 124 IHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAG 182


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  113 bits (271), Expect = 6e-26
 Identities = 59/112 (52%), Positives = 70/112 (62%)
 Frame = -1

Query: 418 KDPKRLFXGNALLXSSGSYWSTXXKTDETRLCAWSED*GLLGASSADAGVQSWPGKSIHH 239
           K P+R+F G ALL     Y       ++            L         +S   KSIHH
Sbjct: 67  KSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHH 126

Query: 238 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 83
           +R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N
Sbjct: 127 SRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 110 TSTEWRFQREVNVLARVQAHN 172
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 343 TDETRLCAWSED*GLLGASSADAGVQSW 260
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 278 RRCSKLAWXVHPSCQNFDPAKAYSCPQASCEH 183
           RR   L W +          K Y CP+ SC H
Sbjct: 82  RRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVH 113


>At1g12160.1 68414.m01408 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase FMO2 from Homo sapiens
           [SP|Q99518]; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 468

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 274 GVQSWPGKSIH 242
           G++SWPGK IH
Sbjct: 182 GIESWPGKQIH 192


>At1g12130.1 68414.m01405 flavin-containing monooxygenase family
           protein / FMO family protein contains similarity to
           flavin-containing monooxygenase 2 (FMO2) from Homo
           sapiens [GI:1834493]; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 470

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 274 GVQSWPGKSIH 242
           G++SWPGK IH
Sbjct: 185 GIESWPGKQIH 195


>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase FMO3 (dimethylaniline
           monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
           from Oryctolagus cuniculus, [SP|P97501] from Mus
           musculus; contains Pfam profile PF00743 Flavin-binding
           monooxygenase-like domain
          Length = 459

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 274 GVQSWPGKSIH 242
           G++SWPGK IH
Sbjct: 182 GIKSWPGKQIH 192


>At1g62560.1 68414.m07058 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           SP|P32417 from [Oryctolagus cuniculus]; contains Pfam
           profile PF00743 Flavin-binding monooxygenase-like
          Length = 462

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 274 GVQSWPGKSIH 242
           G++SWPGK IH
Sbjct: 183 GIKSWPGKQIH 193


>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
           Mus musculus; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 457

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 274 GVQSWPGKSIH 242
           G++SWPGK IH
Sbjct: 182 GIKSWPGKQIH 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,834,049
Number of Sequences: 28952
Number of extensions: 173373
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)