Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1332
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac... 30 0.36
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 0.47
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 1.4
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 27 2.5
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 27 3.3
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 27 3.3
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 3.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.3
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 4.4
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 26 4.4
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 26 4.4
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 5.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 5.8
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 5.8
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 7.7
>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 29.9 bits (64), Expect = 0.36
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 190 LTTKSVDEKFKERDDTHKEIE 128
+TTK++DE+ KE D+ KE+E
Sbjct: 50 ITTKTLDERIKEDDELSKEVE 70
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.5 bits (63), Expect = 0.47
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 495 LNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGR 316
+ A+V K+R+ SE E AKKEEK K K+ K+ +E+ K ++ +
Sbjct: 415 VEAEVNGVEDSKKRKSVESSEKDED--EAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
Query: 315 S 313
S
Sbjct: 473 S 473
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 327 PGVFAIFLPCPSTVLTCFCYMTFPL 401
P V IFLP P TV+ C +TF +
Sbjct: 368 PSVCRIFLPSPGTVVFCVFDVTFAM 392
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 336 FAIFLPCPSTVLTC---FCYMTFPLSLLPL*ESYRFQRAIQIH 455
+A L CP +L +CY + LP SYR QR IH
Sbjct: 166 YAKILDCPDEILQLIFSYCYDASYIEKLPFAFSYRKQRHTLIH 208
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -3
Query: 175 VDEKFKERDDTHKEIEAESGEVCETLNLCDLVFNDPDVLKGNFDL 41
VD K D +E+ E+G V ++ +++NDP + N +
Sbjct: 92 VDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGLTNANLKI 136
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -1
Query: 513 PRLI-RRLNADVQAETAMKEREFEWLSETGS-SLIEVAKKEEKSYSKNTSKQLKDMEERW 340
PR++ LNA + +T F+WL + G+ + ++A+ + +D EE
Sbjct: 692 PRMLPSHLNAIIDVDTWEVPEVFKWLKDAGNVPISDMARTFNMGIGMVVAVASEDAEETM 751
Query: 339 RKLQETGRS 313
++L G +
Sbjct: 752 KELTSVGET 760
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 486 DVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEER 343
D ET KE + + ET S IEV KEEK+ SK T+ +++ + +
Sbjct: 482 DKVEETESKEADVK-AKETDS--IEVDDKEEKTDSKETADKVEQTDSK 526
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 417 IEVAKKEEKSYSKNTSKQLKD 355
+EV K+E++S SK +KQL+D
Sbjct: 1019 VEVLKEEKESSSKELAKQLED 1039
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 496 PSDQTWGSKAVMSLLLLPEVSKRVSTVVIHSVNRLNRVSNMA 621
P D+ WG+ A ++ +L + VS V +H +++V MA
Sbjct: 642 PKDRIWGTSACVTASVL----QGVSIVRVHDTKEMSKVVGMA 679
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = -3
Query: 220 KLTTTVILEYLTTKSVDEKFKERDDTHKEIEAESGEVCETLNLCDLVFNDPDVLKGNFDL 41
K+T T L+ + +D E + E EAESG + +L ++ L+ + D
Sbjct: 498 KITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYS----LRNSLDD 553
Query: 40 RNLRTGVDIVEKK 2
NL+ VD +K+
Sbjct: 554 PNLKDKVDASDKE 566
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 656 HSQTSRXTGKFXAIFDTRFKRFTEWITTVETRLETSGSS 540
+S G+ A+ D K+F +W+ T E+ E+ S
Sbjct: 639 YSDPRSSEGELAALRDAGGKQFVDWLNTAESESESEEGS 677
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 69 GSLNTRSQRFKVSHTSPLSASIS 137
GSLNT F SH+S L S S
Sbjct: 148 GSLNTAPSNFAYSHSSSLQTSAS 170
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -1
Query: 480 QAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKL 331
+ +TA+ + +FE LSE IE ++K ++N K K+ R R+L
Sbjct: 988 KGKTAVDDGKFEDLSEKDLKKIEAKATKKKKLTRNEIK-AKERRAREREL 1036
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 202 ILEYLTTKSVDEKFKER-DDTHKEIEAESGEVCETLNLCDLV 80
+ E+L K V ++F E+ DDTH + E + E + L +C ++
Sbjct: 781 VTEFLV-KKVIQRFPEKYDDTHNDEEWCTYEKLDNLTMCKVL 821
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 389 DFSSFFATSIRELPVSESHSNSRSF 463
D+ FF ++RE P+S + R F
Sbjct: 197 DYDDFFTNTVRETPLSSAPEPKRRF 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,923
Number of Sequences: 5004
Number of extensions: 49552
Number of successful extensions: 207
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -