Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1332
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273...    30   2.0  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    30   2.0  
04_04_0775 - 27989704-27990281,27990407-27990653,27990743-279908...    29   2.6  
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808...    29   3.4  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           29   4.5  
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259...    29   4.5  

>09_05_0005 +
           20026190-20026343,20026483-20026682,20026918-20027309,
           20027646-20027778,20027858-20027942,20028216-20028235
          Length = 327

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = -1

Query: 513 PRLIRRLNADVQAETAMKEREFEWLSETGSSL----IEVAKKEEK--SYSKNTSKQLKDM 352
           P+ ++R+  + ++    KER   +  E  S +    IE+ K  EK  +  +  ++ L   
Sbjct: 244 PKKVKRVLCNRRSAARSKERRLNYKLELESKVLVLKIEIEKLSEKLATAQRTFNELLAQN 303

Query: 351 EERWRKLQETGRSRIVK 301
            E   K+QETGR R +K
Sbjct: 304 NELKIKIQETGRERQMK 320


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 531 HHRFRSPRLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDM 352
           H R  +  L++R  AD+Q    +   E E   E   +  E  + EEK    N  +++  +
Sbjct: 578 HQRLENEELLKRERADLQRNLQLHRHELEMEMEKKQASKE-RELEEKENELN--RKMDFV 634

Query: 351 EERWRKLQETGRSRIVKI 298
           E   ++  E   S+I KI
Sbjct: 635 ENELKRAAELNESKIQKI 652


>04_04_0775 -
           27989704-27990281,27990407-27990653,27990743-27990837,
           27990918-27992388,27993142-27993194,27993295-27993430
          Length = 859

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 9   STMSTPVLKFLRSKLPLRTSGSLNTRSQRFKVSHTS 116
           S+ S P +KF    +PL TS S NT+   FK  H S
Sbjct: 504 SSNSDPPMKF-GELIPLDTSTSANTQLDEFKTDHAS 538


>01_06_0554 +
           30179641-30179658,30179725-30180126,30180580-30180892,
           30180966-30181358,30181442-30182427
          Length = 703

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 519 RSPRLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKS 388
           RSPRL R+ N+   AE  +KER  E      S + +   + E++
Sbjct: 323 RSPRLARQNNSHDSAENTLKERSEERQPSPDSMIDQAESRSEQA 366


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/73 (28%), Positives = 29/73 (39%)
 Frame = -3

Query: 253  EIRIKLHVIESKLTTTVILEYLTTKSVDEKFKERDDTHKEIEAESGEVCETLNLCDLVFN 74
            E    L    S+L   V+ E     S++E    + D  K I       CE L    LVF 
Sbjct: 930  ECNENLETKSSRLLVVVVEECKCLNSLEESLLVQGDYIKSIHVLRISDCEDLEAAPLVFE 989

Query: 73   DPDVLKGNFDLRN 35
              + L+   D+RN
Sbjct: 990  QMNELR-ELDIRN 1001


>02_04_0067 -
           19425019-19425288,19425393-19425647,19425766-19425937,
           19426069-19426302,19426523-19426656,19427663-19427746,
           19428355-19428645,19428788-19429120,19429317-19429390,
           19429464-19429644,19429993-19430096,19430232-19430392,
           19430727-19431040,19431583-19431864,19432431-19432732,
           19433176-19433266,19433368-19433421,19438917-19438993,
           19439081-19439240,19439410-19439494,19439574-19440130
          Length = 1404

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 444 WLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQ 328
           W S TG+S   +++ +  ++ +      KDM+ R  KLQ
Sbjct: 741 WTSATGTSRAIISRDKFSTFDRRGKDMSKDMDNRMPKLQ 779


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,536
Number of Sequences: 37544
Number of extensions: 273258
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)