Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1332
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 31 0.87
SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 29 2.7
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_7706| Best HMM Match : Spectrin (HMM E-Value=0) 29 4.6
SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6) 28 6.1
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3) 28 6.1
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 28 6.1
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_11517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_33804| Best HMM Match : Uteroglobin (HMM E-Value=1) 28 8.1
SB_20144| Best HMM Match : E-MAP-115 (HMM E-Value=0.41) 28 8.1
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -3
Query: 187 TTKSVDEKFKERDDTHKEIEAESGEVCETLNLCDLVFNDPDVLKGNFDLRNLRTGVDIVE 8
T VDE KE +T KEI+ +V E + D LK F RN+ + DI
Sbjct: 1345 TKTKVDETNKEVQETKKEIQETKKDVHEVKGKVSEMAVDLASLKEEFSSRNVNSKKDITA 1404
Query: 7 KK 2
K
Sbjct: 1405 AK 1406
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -1
Query: 501 RRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQET 322
R+ N D++ + +ERE + +S T + L KK E + N +QL + ++ L+ET
Sbjct: 1112 RKENTDLKRQLKDEEREKDAVSHTANELRGKVKKSE-AEKTNLRRQLDEASQKIASLEET 1170
>SB_8811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 569
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = -1
Query: 492 NADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSK---NTSKQLKDMEERWRKLQ 328
++DV AE A KE++ +E G +L+E ++ + Y K S++++ +E+ +L+
Sbjct: 64 DSDVYAELAQKEKDLLLAAELGKALLEKNEELSQKYEKLQEEFSQRVEQLEQEKHELK 121
>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
Length = 1136
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -1
Query: 471 TAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETG 319
+A+KERE W + + + E K T K ++ W K+QETG
Sbjct: 436 SAIKERETSWKKQK-AEIEEHYNKIINDLQNRTKKTQNLADKAWEKVQETG 485
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 459 EREFEWLSETGSSLIEVAKK-EEKSYSKNTSKQLKDMEERWRKLQE 325
E FE +S G+ ++E + EEK K +L DME+RW+ ++E
Sbjct: 1962 EPVFEKVSSCGNDVLESLEAGEEKDDLKG---KLDDMEQRWKSVKE 2004
>SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 686
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 229 IESKLTTTVILEYLTTKSVDEKFKERDDTHKEIEAESGEVCETLNL 92
I K+ T + Y ++ KF++ E+EA V ET+NL
Sbjct: 106 ISEKMQTVLDESYKDPTNLQSKFQKHQAFEAEVEANKERVLETVNL 151
>SB_41890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = -3
Query: 232 VIESKLTTTVILEYLTTKSVDEKFKERDDTHKEIEAESGEVCETLNLCDLVFNDPDVLKG 53
+I SKLT+T L+ KS+ E+F ++KE+ A + C L+ N +L+
Sbjct: 29 LISSKLTSTETLDERELKSLTEEF----SSNKELLASIEKTCRELDQATQGTNYAKLLR- 83
Query: 52 NFDLRNLRTGVDIVEKK 2
DL + +T + V K
Sbjct: 84 --DLEHFKTKWETVHTK 98
>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
Length = 1130
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -1
Query: 489 ADVQAETAMKEREFEWLSETGSSLIEV--AKKEEKSYSK-NTSKQLKDMEE 346
ADV+ T E EFE E+ SL + AKK+E +Y+K + SK+ + E
Sbjct: 938 ADVRRRTKSDEMEFETPPESPQSLDDQGGAKKKEHTYAKVDKSKKTRHSME 988
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = -3
Query: 292 ITRNYNTARREA*EIRIKLHVIESKLTTTVILEYLTTKSVDEKFKE-----RDDTH 140
+T Y+T R + + K H + K T L Y TT+ +FK ++DTH
Sbjct: 687 VTHGYDTKRHDTHDYDTKRHDMHYKTTRHARLRYKTTRHARLRFKTTRHAIQNDTH 742
>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
Length = 471
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -1
Query: 441 LSETGSSLIEVAKKEEKSYSKNTSKQLKDMEE 346
++ETG+SL++ ++K+ +K ++LKD+ E
Sbjct: 323 IAETGTSLLKCSEKKILKEAKRQKRKLKDINE 354
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -1
Query: 480 QAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGR 316
+ E +E E + E L+E +KE++ K ++ K+ E+R RK E R
Sbjct: 389 EEEKRKREGEVKKRKEEEERLVEARRKEQEEKRKLEEQKRKEEEDRRRKEAEEKR 443
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 599 KRFTEWITTVETRLETSGSSSSDITAL 519
+ FT W+ TVE R++ + S D++AL
Sbjct: 362 REFTVWLCTVEDRVDRAEPVSHDVSAL 388
>SB_11517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 480 QAETAMKEREFEWLSETGSSLIEVAK--KEEKSYSKNTSKQLKDMEERWRKLQE 325
+ E +KE E EWL E + + + K+EK + +K+ +D+ R + +E
Sbjct: 187 EEERRLKELEAEWLKEQNAMRAQEEEFLKQEKLRKQEAAKRARDVSIRLKNEKE 240
>SB_33804| Best HMM Match : Uteroglobin (HMM E-Value=1)
Length = 514
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -1
Query: 531 HHRFRSPRLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKE 397
HHRF ++R+ A+ + T +KE + S++ + L++ +++
Sbjct: 175 HHRFELLDIVRQDQAETEFVTCLKEVRIGYSSDSSTQLLKRLERD 219
>SB_20144| Best HMM Match : E-MAP-115 (HMM E-Value=0.41)
Length = 416
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 480 QAETAMKEREFEWLSETGSSLIEVAK--KEEKSYSKNTSKQLKDMEERWRKLQE 325
+ E +KE E EWL E + + + K+EK + +K+ +D+ R + +E
Sbjct: 147 EEERRLKELEAEWLKEQNAMRAQEEEFLKQEKLRKQEAAKRARDVSIRLKNEKE 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,709,913
Number of Sequences: 59808
Number of extensions: 342090
Number of successful extensions: 1307
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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