Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1332
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical ... 30 1.3
AF039720-1|AAB96694.1| 437|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81107-9|CAB03234.2| 304|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z68335-4|CAA92732.2| 304|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 29 2.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 2.3
U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical pr... 27 9.4
U64833-5|AAK95860.1| 402|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical ... 27 9.4
>AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical
protein C29F9.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -1
Query: 480 QAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRSRI 307
QAE M + E E LIE+ K K + + LK E+WR L+E + I
Sbjct: 48 QAERKMLRLKQEEQLEEVMKLIEITKNSLKMDFQKKKQILKQHAEKWRMLKEQHKKEI 105
>AF039720-1|AAB96694.1| 437|Caenorhabditis elegans Hypothetical
protein F33D11.5 protein.
Length = 437
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 253 EIRIKLHVIESKLTTTVILEYLTTKSVDEKFKERDDT 143
EIR K + + K+TT ILEY+ + ++K ER DT
Sbjct: 316 EIR-KRYPEKEKITTLDILEYMHENTANDKLNERRDT 351
>Z81107-9|CAB03234.2| 304|Caenorhabditis elegans Hypothetical
protein R07H5.10 protein.
Length = 304
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -1
Query: 474 ETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRK--LQETGRSRIVK 301
+T KER++E +SE +K+E+ + + ++ K EE+++K + RS +VK
Sbjct: 163 DTPKKERKYEKVSEDQKDEKYSSKREKNNLAVKRCREKKKNEEKYKKEAFENLIRSNLVK 222
>Z68335-4|CAA92732.2| 304|Caenorhabditis elegans Hypothetical
protein R07H5.10 protein.
Length = 304
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -1
Query: 474 ETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRK--LQETGRSRIVK 301
+T KER++E +SE +K+E+ + + ++ K EE+++K + RS +VK
Sbjct: 163 DTPKKERKYEKVSEDQKDEKYSSKREKNNLAVKRCREKKKNEEKYKKEAFENLIRSNLVK 222
>Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical
protein R07E5.6 protein.
Length = 443
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -1
Query: 504 IRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQE 325
+RR AD++ + +E E + + + E KK+++ K+ D EE+ +K E
Sbjct: 221 VRRREADIKEMAETERKEKEKVEKNKMEMTEKIKKKDEDEKAKKEKERIDKEEKIKKEVE 280
Query: 324 TGRSR 310
+
Sbjct: 281 EAEKK 285
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 29.5 bits (63), Expect = 2.3
Identities = 8/34 (23%), Positives = 25/34 (73%)
Frame = -1
Query: 414 EVAKKEEKSYSKNTSKQLKDMEERWRKLQETGRS 313
E+A ++ K+YS+ ++ ++ +++W+K ++T ++
Sbjct: 587 EIAAQKRKAYSEEAWRRYQEYQKQWKKFRQTQKT 620
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -1
Query: 501 RRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQET 322
R L D + +E E + E KEE+ +K ++ K++EER RK +E
Sbjct: 104 RALENDSDEDVGDDGKEEEMKKKKEKEEEERRAKEERKKAKKEKQRQKELEERNRKAEEA 163
Query: 321 GRSR 310
R
Sbjct: 164 ASKR 167
>U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical
protein ZC196.4 protein.
Length = 468
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 166 KFKERDDTHKEIEAESGEVCETL 98
+ KE+DD+ KE E ++GE E L
Sbjct: 196 ELKEQDDSEKECEEQNGEFLEKL 218
>U64833-5|AAK95860.1| 402|Caenorhabditis elegans Hypothetical
protein B0507.10 protein.
Length = 402
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 498 RLNADVQAETAMKEREFEW-LSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRKLQET 322
++N VQ ++A E L ET L + A++++K +KQ+++ME +L
Sbjct: 22 KINRQVQQKSAGLHAAHERELDETREKLKKGAEEKKKEILNQRAKQIEEMEALQERLNAI 81
Query: 321 GRSRI 307
R ++
Sbjct: 82 TREKL 86
>AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical
protein Y97E10AR.6 protein.
Length = 446
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 333 VFAIFLPCPSTVLTCFCYMTFPLSLLPL*ESYRF 434
VF++F P + CFC+ FP S+ + S+ F
Sbjct: 17 VFSVFSPI--SAFFCFCFSIFPFSVPDIFSSHSF 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,565
Number of Sequences: 27780
Number of extensions: 266016
Number of successful extensions: 1091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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