Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1332
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.51 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.51 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.51 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.3  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 141 IKKLKPKVERCVKL*ISAILCSTTPMFSKVTSISET*E 28
           +KKL P+ E C +L ++ IL    P F  V  + +  E
Sbjct: 262 LKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEE 299


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 141 IKKLKPKVERCVKL*ISAILCSTTPMFSKVTSISET*E 28
           +KKL P+ E C +L ++ IL    P F  V  + +  E
Sbjct: 177 LKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEE 214


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 141 IKKLKPKVERCVKL*ISAILCSTTPMFSKVTSISET*E 28
           +KKL P+ E C +L ++ IL    P F  V  + +  E
Sbjct: 496 LKKLCPQEEACFRLLMNDILRPYVPEFKGVLDVKDVEE 533


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 499 SDQTWGSKAVMSLLLLPEVSKRVSTVVIHSVNRLNRVSNM 618
           +++T  +   M ++ LP+ +K      ++ VNR+NR+  M
Sbjct: 348 NEETLQTVVAMKMMHLPQSNKMNRMHRMNRVNRVNRMDRM 387


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -3

Query: 421 SYRGSKERGKVI*QKHVKTVEGHGRKMAKTPGNW*I*NCENY*ITRNYN 275
           SYR  +E  K   +   +      RK+  +  N  I N  NY    NYN
Sbjct: 293 SYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYN 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,704
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)