Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1332
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80870.1 68414.m09489 protein kinase family protein contains ...    30   1.6  
At3g28770.1 68416.m03591 expressed protein                             28   5.0  
At5g55860.1 68418.m06963 expressed protein contains Pfam profile...    28   6.6  
At1g04490.1 68414.m00440 expressed protein                             28   6.6  
At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    27   8.8  
At2g17990.1 68415.m02091 expressed protein                             27   8.8  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    27   8.8  

>At1g80870.1 68414.m09489 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 692

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = -1

Query: 489 ADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWRK 334
           A+ + E+ + E  F+ L E  +   E+++++ K  SKN  K+ ++MEE W++
Sbjct: 403 AEHRDESGLNESRFDTLEEKFAKE-EISERKNKR-SKNKKKKHRNMEEWWKE 452


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -1

Query: 510  RLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKS---YSKNTSKQLKDMEERW 340
            +L+++ +   + +   ++ E + +  + S   EV KKE+KS     K   K++K+ EE+ 
Sbjct: 1145 KLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKK 1204

Query: 339  RKLQETGRSR 310
             K  E  R +
Sbjct: 1205 LKKNEEDRKK 1214


>At5g55860.1 68418.m06963 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 649

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 516 SPRLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWR 337
           S R +  L   ++A    ++   +  +E   SLIE AK    S + ++  Q +DMEE   
Sbjct: 99  SKRTVDELTRKLEAVNESRDSANK-ATEAAKSLIEEAKPGNVSVASSSDAQTRDMEEYGE 157

Query: 336 KLQE--TGRSRIVKI 298
             +E  T +  + KI
Sbjct: 158 VCKELDTAKQELRKI 172


>At1g04490.1 68414.m00440 expressed protein 
          Length = 401

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -1

Query: 516 SPRLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTSKQLKDMEERWR 337
           S  L+ R+N        + EREF   S  G +L     ++ +  SK     +K+ E R  
Sbjct: 149 SSHLVGRINVSTLFSEKVLEREFVLFSSNGENLKIPRTRKNRGLSKKVVHAVKN-ERRTA 207

Query: 336 KLQET 322
           +L  T
Sbjct: 208 RLSRT 212


>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
 Frame = -1

Query: 510 RLIRRL-NADV-QAET-AMKEREFEWLS---ETGSSLIEVAKKEEKSYSKNTSKQLKDME 349
           RL R L N ++ QA+  + ++ EF+ +    E   S I   KK+E+   +     LK  E
Sbjct: 742 RLSRMLGNKEIFQAQVISRRQAEFDRIRTEREERISKIIREKKQERDIKRKQIYYLKIEE 801

Query: 348 ERWRKLQETGRSR 310
           ER RKLQE   +R
Sbjct: 802 ERIRKLQEEEEAR 814


>At2g17990.1 68415.m02091 expressed protein 
          Length = 338

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 166 KFKERDDTHKEIEAESGEVCETLNLCDLVFNDPDVLKGNFDLRNLRTGVDIVEK 5
           +F   +D  KE+   SG V  T  +   + +   VL    DL N+  GV+ +E+
Sbjct: 49  EFGSEEDARKELGVLSGRVRSTATMLRYLRSKARVLAIPDDLANVSCGVEQIEE 102


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
 Frame = -1

Query: 513 PRLIRRLNADVQAETAMKEREFEWLSETGSSLIEVAKKEEKSYSKNTS--KQLKDM---- 352
           P L+ ++N DVQ     +E  +  LS+    +  + ++ E +  K T   KQ ++M    
Sbjct: 254 PALLNQIN-DVQKALLEQEAAYNTLSQEHKQINGLFEEREATIKKLTDDYKQAREMLEEY 312

Query: 351 ----EERWRKLQETGR 316
               EE  R++QETG+
Sbjct: 313 MSKMEETERRMQETGK 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,695
Number of Sequences: 28952
Number of extensions: 246295
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)