Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1330
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   1.6  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.9  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 446 TQCKLRAMDTNNIKMLFKSGPIVDSEKMAMNLINL--LEITSEKM 574
           T C+L  ++    K L    P+  ++ M +  INL  L++  +K+
Sbjct: 298 TVCELTILEYKRTKKLLYRIPVTKTDSMLIRNINLFSLQLAHQKL 342


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 446 TQCKLRAMDTNNIKMLFKSGPIVDSEKMAMNLINL--LEITSEKM 574
           T C+L  ++    K L    P+  ++ M +  INL  L++  +K+
Sbjct: 123 TVCELTILEYKRTKKLLYRIPVTKTDSMLIRNINLFSLQLAHQKL 167


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 645 FHCYIIMLLISNYIRYC*IIF 583
           F+C +I+LL   Y  Y  I+F
Sbjct: 228 FYCVLIILLCIYYFYYAFILF 248



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 104 IVVLVFFSCPFVWANITNLR*LRFIFFGTHYLVL 3
           ++ +  F C F+   +  L    FIFF  H L L
Sbjct: 163 LLCIYHFFCAFIIFTMHLLFCCAFIFFNMHLLFL 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,130
Number of Sequences: 336
Number of extensions: 3072
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)