Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1330
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 29 0.58
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 29 0.58
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 4.1
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 5.4
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 25 9.4
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 9.4
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 9.4
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.4
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 9.4
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.58
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = -1
Query: 531 AIFSLST-IGPDLKSILILFVSIALSLH*VA*SVAFSNI*SHSL 403
+IF +S+ IGP L SIL+L VS+ L L+ ++ ++ F N HSL
Sbjct: 163 SIFVVSSCIGPFLGSILLLRVSL-LQLYLISWTIHFINFVFHSL 205
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.58
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +3
Query: 30 NKSQLSQVSYVSPNKR--ARKENKDNYLYICLRDSGLTLKDPPEKNCASRESIQII-RNI 200
N S LS+ Y+SPN+R R + ++I + +GL D +K+ S+ II N+
Sbjct: 152 NFSDLSKGFYISPNERNFTRLCRSASSVHISYQ-NGLYCID-KDKSLTKEPSVNIILMNV 209
Query: 201 KKNLESHFDYPRNVGELFK 257
K+LE+ F ++ L+K
Sbjct: 210 GKSLETFFTVDKDQFLLYK 228
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 426 SNI*SHSLGCKIGTLSNILMTLSLLGCSSELSFIL 322
SNI SH L G + N+L++L G SS +F+L
Sbjct: 889 SNITSHEL-LHSGLIHNLLLSLKKFGSSSLRTFLL 922
>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 591 IIFNRTIFSDVISKRLIKFIAIFSLST 511
II IFS VIS+ +I FI++F+ +T
Sbjct: 44 IIITLFIFSFVISRMIIFFISLFNKNT 70
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 123 LLNKYIDSCPCFLFLP 76
+LN YI SCP FL P
Sbjct: 461 ILNNYIFSCPLFLVTP 476
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 331 LYSEYDIWEKIMFENIHILTSYLQILNSSPTF 236
L+S+YD+W K M E L+S L +N + F
Sbjct: 24 LFSKYDLWSKAMDEK--KLSSSLFTVNDTQEF 53
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 192 RNIKKNLESHFDYPRNVGELFK 257
R KN+ H++ PRNVG L K
Sbjct: 52 RMYHKNVLDHYNNPRNVGTLPK 73
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 517 VYYWSRLEKHFNIICIHCSKLALSCLISCFLKYII 413
V+YWS++ K ++ ++ +I+ KYII
Sbjct: 26 VFYWSQIHKVRKLVDRSIERMESCSIINIITKYII 60
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 511 YWSRLEKHFNIICIHCSKLALSCL 440
Y +LEK+++I +C KL +S L
Sbjct: 290 YVKKLEKYWSIYLSNCKKLGISTL 313
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 290 FKHYLFPNIVFRIKDNSEEQPSNDSVIKILLSVPILQPKLCDYIFE 427
F HYLF +I I+ S+ P S ++ L +P+ Q L + + E
Sbjct: 608 FNHYLFESIGALIRSLSKSGPQTVSQLENAL-LPVFQNVLIEDVTE 652
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,404
Number of Sequences: 5004
Number of extensions: 51586
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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