Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1330
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1265 + 28847782-28849803                                         28   5.6  
12_01_0359 + 2736797-2737050,2737801-2738153,2738583-2738821,273...    28   7.4  

>06_03_1265 + 28847782-28849803
          Length = 673

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 404 KLCDYIFEKATDQATQCKLRAMDTNNIKMLFKSG-PIVDSEKMAMNLINLLEI 559
           KLC  +FE+  + A+ C         I    K G  I D+ K  + L+ LL++
Sbjct: 298 KLCVAVFERRPEAASSCFAEIASRAGILDFLKFGRAICDARKDPIKLLRLLDV 350


>12_01_0359 +
           2736797-2737050,2737801-2738153,2738583-2738821,
           2738916-2739035,2739115-2739162
          Length = 337

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 174 ESIQIIRNIKKNLESHFDYPRNVGELFKICR*DVR 278
           + +++  NI+ NLE+ F+ P NV +   + + + R
Sbjct: 224 QMVEVNTNIQSNLETEFEIPENVSQAIGLKKKETR 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,581,026
Number of Sequences: 37544
Number of extensions: 259277
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)