Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1330
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)                      29   4.3  
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      27   9.9  
SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)          27   9.9  
SB_26149| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_1322| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00096)           27   9.9  

>SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)
          Length = 697

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 526 FFTVYYWSRLEKHFNIIC 473
           F T YY++R+EK +N++C
Sbjct: 114 FITSYYFNRIEKPWNLVC 131


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 455 KLRAMDTNNIKMLFKSGPIVDSEKMAMNLINLLEITSEKMVR 580
           +++ ++T N K+  +    VD        + LLE+T EKMV+
Sbjct: 297 RIKELETENTKLSRELHNFVDQNTHLQEKVLLLELTKEKMVK 338


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = -1

Query: 645  FHCYIIMLLISNYIRYC*IIFNRTIFSDVISKRLIKFIAIFSLSTIGPDLKSILILFVSI 466
            F   I+ + + + I     +F+ TI    +    I FI +FS+  +   + S++ILF+++
Sbjct: 1132 FSVIILFITVFSVIILFITVFSVTILFITVFSVTILFITVFSVIILFITVFSVIILFITV 1191


>SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)
          Length = 1264

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 374 ILLSVPI--LQPKLCDYIFEKATDQATQCKLRAMDTNNIKMLFKSGPIV 514
           +LL  P+  + PK+  +IFE+      + K+R + T+ ++ L K+  IV
Sbjct: 704 LLLDDPLSAVDPKVAQHIFEECICGELREKVRILATHQLQFLHKADQIV 752


>SB_26149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 212 RKSFRLPSKRWRTI*NLQIRCQDMDIF--KHYLFPNIVFRIKDN 337
           +  ++ P KR+R   N+  RC  + +   + Y +P   +R+K+N
Sbjct: 5   KTKYKYPMKRYRVKQNINTRCSVIGLSGKRKYKYPMKRYRVKEN 48


>SB_1322| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00096)
          Length = 129

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 224 RLPSKRWRTI*NLQIRCQDMDIFKHYLFPNIVFRIKDNSE 343
           R+PS +W T   +Q   +  D++  YL  ++V + + NS+
Sbjct: 73  RVPSNQWITRYTIQYLPEGSDVWNSYLENDVVKQFQGNSD 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,419,040
Number of Sequences: 59808
Number of extensions: 328295
Number of successful extensions: 866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)