Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1330
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote...    30   1.5  
At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex pr...    30   1.5  
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /...    29   2.7  
At3g47200.1 68416.m05125 expressed protein contains Pfam profile...    27   8.1  

>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1135

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 99  NYLYICLRDSGLTLKDPPE-KNCASRESIQIIRN-IKKNL 212
           N   +CL  +GLT K PPE  +C S ++++I  N + +NL
Sbjct: 155 NLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENL 194


>At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex
           protein, putative similar to iron-sulfur cluster
           assembly complex ISCU1 (GI:11545705) [Homo sapiens];
           nifU protein homolog YPL135w (GI:15619823)
           [Saccharomyces cerevisiae] PIR2:S69049
          Length = 167

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 SIQIIRNIKKNLESHFDYPRNVGELFK 257
           S+ I+R   +N+  H+D PRNVG   K
Sbjct: 22  SVGILRTYHENVIDHYDNPRNVGSFDK 48


>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Lycopersicon
           esculentum] GI:4325090; contains PF00295: Glycosyl
           hydrolases family 28
          Length = 471

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 284 DIFKHYLFPNIVFRIKDNSEEQP 352
           D+FK+  F N+  R+K NS++ P
Sbjct: 392 DVFKNICFLNVTLRVKKNSKKSP 414


>At3g47200.1 68416.m05125 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 476

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 168 SRESIQIIRNIKKNLESHFDYPRNVGELFKICR*DV 275
           + E +  +RN K  +E+HF     V E FK    DV
Sbjct: 357 NEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDV 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,190
Number of Sequences: 28952
Number of extensions: 243075
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)