Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1329
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4C5F8 Cluster: Transcriptional regulator, AraC family ...    36   1.3  
UniRef50_Q647F4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q20XS1 Cluster: Preprotein translocase subunit SecA (AT...    33   5.4  
UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ss...    33   7.1  
UniRef50_O67321 Cluster: Adenylosuccinate synthetase; n=3; Bacte...    33   7.1  
UniRef50_Q4QC85 Cluster: Putative uncharacterized protein; n=4; ...    33   9.4  

>UniRef50_A4C5F8 Cluster: Transcriptional regulator, AraC family
           protein; n=1; Pseudoalteromonas tunicata D2|Rep:
           Transcriptional regulator, AraC family protein -
           Pseudoalteromonas tunicata D2
          Length = 338

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -1

Query: 372 RPAGYRPALSLVFTHPALDSVCRYQTPSSHINLVSPFYYP--VXRVYKSILCLSFVTNTC 199
           R  GY PA+++ F +P  D + +YQT   H+ ++  F +P  +  V KS+L + F+ NT 
Sbjct: 161 RQLGYTPAITIKFPYPEPDYLEQYQT---HLAVLCEFDFPFFMISVPKSLLTMPFI-NTS 216

Query: 198 L 196
           L
Sbjct: 217 L 217


>UniRef50_Q647F4 Cluster: Putative uncharacterized protein; n=1;
           Thermoproteus tenax spherical virus 1|Rep: Putative
           uncharacterized protein - Thermoproteus tenax spherical
           virus 1
          Length = 212

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -2

Query: 209 LIHAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNE*RTSCTPYFCNNLNDVRISCYI 30
           LIH+Y+F   FA   + ++++   L  + + +        +S  P+ C+N+  +   CYI
Sbjct: 77  LIHSYLFTFSFAETKVFEVLYDARLGAYGVVMQNKFMP-LSSLEPFVCDNVVGLTRLCYI 135


>UniRef50_Q20XS1 Cluster: Preprotein translocase subunit SecA
           (ATPase RNA helicase)-like; n=1; Rhodopseudomonas
           palustris BisB18|Rep: Preprotein translocase subunit
           SecA (ATPase RNA helicase)-like - Rhodopseudomonas
           palustris (strain BisB18)
          Length = 145

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +2

Query: 488 HKRSRRFVIGMPTCSIEQAEAVRQYYAAFSSSEERARVTFAVLSA 622
           H+R +  +IG P  SIE  +AV  Y+AA   S+     TF VL A
Sbjct: 85  HRRGQPVLIGTP--SIEHCDAVAAYFAAHGWSQGDGERTFTVLHA 127


>UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ssRNA
           positive-strand viruses, no DNA stage|Rep: Long-distance
           movement protein - Pea enation mosaic virus (PEMV)
          Length = 236

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 338 TRERAG-R*PAGLPRQDHFNTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSRR 505
           +RER G   P+  P+      L T +   +  H GT FR+   S+V+ S   +R+RR
Sbjct: 49  SRERKGYTHPSPTPKNSRQGQLRTEAVQEHPKHGGTAFRRESGSSVHPSRPRRRARR 105


>UniRef50_O67321 Cluster: Adenylosuccinate synthetase; n=3;
           Bacteria|Rep: Adenylosuccinate synthetase - Aquifex
           aeolicus
          Length = 432

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/76 (26%), Positives = 39/76 (51%)
 Frame = +3

Query: 345 REQGDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSS*VCQ 524
           R QG S  A H  + ++   + HL+PT  + EH  G I   +   L+ +  H++   + +
Sbjct: 32  RYQGGS-NAGHTVVVNSQKFILHLLPTGILHEHVKGVIAQGMVVDLEVL--HKEVKNLEE 88

Query: 525 RVLLNKQRLYVNITLH 572
           + +  K+RL+++   H
Sbjct: 89  KGIYVKERLFISDRAH 104


>UniRef50_Q4QC85 Cluster: Putative uncharacterized protein; n=4;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 1761

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 468 LCTSLQDIKDHEDSS*VCQRVLLNKQRLYVNITLHFPALKKGQESPLQ 611
           LCT L ++  H +++ VC+RV+   Q+  +  T   PA   G E+ ++
Sbjct: 345 LCTVLNELGQHAEAAQVCERVIPLLQQALLECTSAHPAATVGDEADVR 392


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,464,594
Number of Sequences: 1657284
Number of extensions: 13832366
Number of successful extensions: 26917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26915
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)