Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1329
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.7  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    26   6.3  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   6.3  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   8.3  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 310 LSLSNTIIAHKSRESILLSRGPCV*IDPLFVL 215
           + LSN II H+  E ++LS   CV +  L +L
Sbjct: 193 VGLSNRIITHRELEMVILSTSLCVQLSLLNLL 224


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 528 HV-GIPMTNLRDLLCPGD*YTADQQCFLNCV 439
           HV G P       L PGD  T DQ+  +NCV
Sbjct: 124 HVNGKPERRAYRQLLPGDLVTVDQKSVMNCV 154


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 538 TSRGCTSILRCIFQ 579
           T+RGC S+ RC+F+
Sbjct: 504 TTRGCQSLARCLFE 517


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = -3

Query: 301  SNTIIAHKSRESILLSRGPCV*IDPLFVLRY*YMLISLACCLLVFRFSI*CTV*LLIFSQ 122
            +N  + H S  +  L   P     P F L   Y L  L  C L+   S+  TV   I S 
Sbjct: 920  TNVWLKHWSEVNTQLGYNP----KPYFYLGI-YTLFGLLSCALISLSSLTITVFCAIKSC 974

Query: 121  SHCH*LVTNNALRAPLT 71
             + H  +    LRAP++
Sbjct: 975  RYLHDSMVKAVLRAPMS 991


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 378 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 470
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,998
Number of Sequences: 5004
Number of extensions: 61010
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)