Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1329
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    29   2.8  
05_01_0231 - 1730428-1730817                                           29   3.7  
09_01_0056 + 914117-914464                                             28   6.5  
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648     28   6.5  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    28   6.5  

>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 438 EHNLGNIVDQLCTSLQDIKDHEDSS 512
           ++N GNI+D +   L+DI+D  DSS
Sbjct: 583 QNNAGNILDSIRNILKDIEDEADSS 607


>05_01_0231 - 1730428-1730817
          Length = 129

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 354 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 497
           GD  R C  K+   +  LH L+  V   +H  G I+ +  +SLQ+I D
Sbjct: 80  GDRNRLCGEKLKKRY--LHELLRDVEPDDHKHGGILQRCKSSLQEIVD 125


>09_01_0056 + 914117-914464
          Length = 115

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 482 PGHKRSRRFVIGMPTCSIEQAEA 550
           P H++ RR+ IGM T ++E A A
Sbjct: 83  PAHRKQRRWGIGMATVAVESAVA 105


>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
          Length = 587

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 374 PRQDHFNTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSRRFVIGMP--TCSIEQAE 547
           P+QD F+  HTS+  T   H+  QFR    +A+   P   R+       P   CS++Q E
Sbjct: 282 PKQDLFDPPHTSAIVTKLAHT-DQFRCLDKAAIVSGPDDVRAGGAAPSNPWRLCSVQQVE 340

Query: 548 AVR 556
            V+
Sbjct: 341 EVK 343


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 288 SHINLVSPFYYPVXRVYKSILCLSFVTNTCL 196
           S   LVSP + P+  + +++  +S++  TCL
Sbjct: 308 SFFRLVSPAFVPIDHIKRALEMMSYLKKTCL 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,020,824
Number of Sequences: 37544
Number of extensions: 388220
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)