Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1329
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88184-9|ABC71833.1| 843|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF101319-5|AAC69356.2| 530|Caenorhabditis elegans Hypothetical ... 30 1.9
AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math ... 29 2.5
AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical ... 29 3.4
Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocar... 28 5.9
AC006641-7|AAF39814.2| 133|Caenorhabditis elegans Hypothetical ... 28 5.9
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 5.9
>U88184-9|ABC71833.1| 843|Caenorhabditis elegans Hypothetical
protein F36H5.3b protein.
Length = 843
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 314 VSVVIKHHHRT*IS*VHFTIPWXVCINRSFVCPSLLIH 201
+S V++ H ++ HF IPW + + R +C + +H
Sbjct: 708 LSNVLEEEHHFSLTEKHFEIPWRISVQRKRMCILIYLH 745
>AF101319-5|AAC69356.2| 530|Caenorhabditis elegans Hypothetical
protein K08D9.6 protein.
Length = 530
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 336 FTHPALDSVCRYQTPSSHINLVSPFYYPVXR-VYKSILCLSFVTNT 202
F+ PAL V + P SH+ +VS +YYP + + K+ + L+ V ++
Sbjct: 67 FSPPALP-VSEHLLPVSHVFIVSAYYYPYSKSLGKNAVALNMVVDS 111
>AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math
domain containingprotein 25 protein.
Length = 364
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 314 VSVVIKHHHRT*IS*VHFTIPWXVCINRS 228
VS ++ H R S VHF IPW + I RS
Sbjct: 17 VSCMVNHEKRYGPSQVHFDIPWRMKIQRS 45
>AF022982-3|AAB69932.1| 670|Caenorhabditis elegans Hypothetical
protein T23B12.6 protein.
Length = 670
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -3
Query: 583 RAGKCSVILTYS--LCLFNRTRWHTY 512
RA CS+++ YS +C++ T W+TY
Sbjct: 213 RAHICSIVVAYSYFVCVYRVTEWNTY 238
>Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical
protein C41G7.5b protein.
Length = 560
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 369 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 274
P G+ P A LV HP + Y TPS+H +L
Sbjct: 506 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 538
>Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical
protein C41G7.5a protein.
Length = 602
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 369 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 274
P G+ P A LV HP + Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 522 GIPMTN-LRDLLCPGD*YTADQQC 454
G+ TN L DL PG +TADQQC
Sbjct: 453 GLISTNHLSDLRLPGQRFTADQQC 476
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 522 GIPMTN-LRDLLCPGD*YTADQQC 454
G+ TN L DL PG +TADQQC
Sbjct: 453 GLISTNHLSDLRLPGQRFTADQQC 476
>AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocarbon
receptor orthologAHR-1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 369 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 274
P G+ P A LV HP + Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580
>AC006641-7|AAF39814.2| 133|Caenorhabditis elegans Hypothetical
protein F45D11.5 protein.
Length = 133
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 480 LQDIKDHEDSS*VCQRVLLNKQRLYVNITLHFPALKKGQESPLQYYL 620
L D+ D E C++ L+ K +L VN LHF A++ E+ +Y L
Sbjct: 72 LADMYDVEPVVRKCEKFLIEKSQLTVNEKLHF-AMQHRMENLKEYCL 117
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 522 GIPMTN-LRDLLCPGD*YTADQQC 454
G+ TN L DL PG +TADQQC
Sbjct: 453 GLISTNHLSDLRLPGQRFTADQQC 476
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,292
Number of Sequences: 27780
Number of extensions: 356368
Number of successful extensions: 728
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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