Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1329
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08430.1 68414.m00932 expressed protein contains Pfam profile...    29   2.4  
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    29   4.1  
At2g09865.1 68415.m01022 hypothetical protein                          28   5.5  
At4g19420.2 68417.m02858 pectinacetylesterase family protein con...    27   9.5  
At4g19420.1 68417.m02857 pectinacetylesterase family protein con...    27   9.5  

>At1g08430.1 68414.m00932 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 493

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
 Frame = +3

Query: 138 SQTVHHIENRNTSKQQAKDISMY**RRTNKGSIYTHGPRDSKMDSRDLCAMMVFDNDRHY 317
           S++VH + +    K + +   +Y   +++ GSI    P DS  D   +  +   DNDR  
Sbjct: 389 SESVHELASAARFKNKMRPTVLY--EKSDSGSIGRAMPIDSHEDHHVVTVLHDVDNDRSN 446

Query: 318 QGQDA*TQEREQGDSLRACH---VKITSTHSTLHHLIPTVCIQEHNLGN 455
              D+       G S  +CH   +KI   +S  H       I  H L N
Sbjct: 447 NVDDS-----RGGSSQDSCHHVAIKIVDDNSN-HEKHEDGEIHVHTLSN 489


>At3g62700.1 68416.m07043 glutathione-conjugate transporter, putative
            similar to glutathione-conjugate transporter AtMRP4
            GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 348  LSLVFTHPALDSVCRYQTPSSHINLVSPFYYP-VXRVYKSILCLSFVTNTCLYLWPVV 178
            +S   T P+   + R  T  +++++  PF    V  +Y ++L +  VT  C Y WP V
Sbjct: 1064 MSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVT--CQYAWPTV 1119


>At2g09865.1 68415.m01022 hypothetical protein
          Length = 339

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 311 TLSRAGCVNTRERAGR*PAGLPRQDH 388
           TLSR GCV +  R  R PA   R +H
Sbjct: 312 TLSRCGCVASTRRRHRSPAPTSRSEH 337


>At4g19420.2 68417.m02858 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 309

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 516 VCQRVLLNKQRLYVNITLHFPALKKG----QESPLQYYL 620
           VC  V++N + L+VNIT    A+ KG      SP  Y+L
Sbjct: 12  VCSLVIMNTEGLFVNITFVRNAVAKGAVCLDGSPPAYHL 50


>At4g19420.1 68417.m02857 pectinacetylesterase family protein
           contains Pfam profile: PF03283 pectinacetylesterase
          Length = 397

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 516 VCQRVLLNKQRLYVNITLHFPALKKG----QESPLQYYL 620
           VC  V++N + L+VNIT    A+ KG      SP  Y+L
Sbjct: 12  VCSLVIMNTEGLFVNITFVRNAVAKGAVCLDGSPPAYHL 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,127
Number of Sequences: 28952
Number of extensions: 319107
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)