Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1328
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    28   0.068
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    28   0.068
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.9  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 489 KLCKQIFDDSEVKSAHLRIKIGIQIY 412
           +LCK+ F DS   + HLRI  G + Y
Sbjct: 81  RLCKKAFSDSSTLTKHLRIHSGEKPY 106


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 489 KLCKQIFDDSEVKSAHLRIKIGIQIY 412
           +LCK+ F DS   + HLRI  G + Y
Sbjct: 337 RLCKKAFSDSSTLTKHLRIHSGEKPY 362


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +1

Query: 643 CKKI--HVSIKYNXVFLNFYFSAFNF 714
           C +I   V  KY   FLN Y   FNF
Sbjct: 335 CSQIPSEVEDKYTTYFLNTYPHLFNF 360


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 209 YLISSNVSYRTCNIPS 256
           Y+I  N +   CNIPS
Sbjct: 133 YVIRGNTAVLKCNIPS 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,056
Number of Sequences: 336
Number of extensions: 3366
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)