Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1328
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical ...    32   0.37 
AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AC006605-2|AAL00853.1|  139|Caenorhabditis elegans Hypothetical
           protein C07H6.9 protein.
          Length = 139

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
 Frame = -1

Query: 433 QNWHTDIFLGTEYYY*KG---------FLNFLLEFLKSHIRFSTTVNINGISLYVVLTIL 281
           Q W+  ++LG+ Y+Y K          ++ F L FL S +     ++ NG+    V+TI 
Sbjct: 8   QTWYQSVYLGSAYFYMKTESFVYLSLVYIQFSLFFLTSILIVIYFISYNGVQRLNVITIT 67

Query: 280 YVDIYVGLRGYVTRTITYIGTNQIIMCLGL 191
              I + +      TI ++G+++I+  + L
Sbjct: 68  TNFIKMVVDVSCFGTIYFVGSSKILPIVDL 97


>AF038618-2|AAB92072.1|  487|Caenorhabditis elegans Hypothetical
           protein F42G8.8 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 382 GFLNFLLEFLKSHIRFSTTVNINGISLYVVLTILYVDIYVGLRG-YVTRTITY 227
           GF N    FL  ++   +  +I  ISL   L I+Y   Y+ LRG + TR I Y
Sbjct: 92  GFCNNRFVFLGDYVDRGSH-SIECISLMFALKIIYQTNYILLRGNHETRAINY 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,341,506
Number of Sequences: 27780
Number of extensions: 273980
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)