Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1328
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10550.1 68417.m01727 subtilase family protein contains simil...    31   0.60 
At2g48010.1 68415.m06009 serine/threonine protein kinase (RFK3) ...    29   2.4  
At1g32970.1 68414.m04060 subtilase family protein similar to sub...    29   3.2  
At2g02650.1 68415.m00204 reverse transcriptase-related similar t...    27   9.8  
At1g25530.1 68414.m03170 lysine and histidine specific transport...    27   9.8  

>At4g10550.1 68417.m01727 subtilase family protein contains
           similarity to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana]
          Length = 778

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 133 PLNNTYAMNVFVPLYIMVTVTQDTLLFD 216
           PLN+ Y + V  PL   VTVT +TL+F+
Sbjct: 697 PLNSVYRVTVEPPLGFQVTVTPETLVFN 724


>At2g48010.1 68415.m06009 serine/threonine protein kinase (RFK3)
           identical to receptor-like serine/threonine kinase
           [Arabidopsis thaliana] gi|2465927|gb|AAC50045
          Length = 617

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 298 VVLTILYVDIYVGLRGYVTRTITYIGTNQIIMC 200
           V+ +I +V++ + LRGY T T  Y G  +II+C
Sbjct: 330 VIASIRHVNL-LALRGYCTATTPYEGHQRIIVC 361


>At1g32970.1 68414.m04060 subtilase family protein similar to
           subtilase GI:9957714 from [Oryza sativa]
          Length = 734

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 133 PLNNTYAMNVFVPLYIMVTVTQDTLLFD*FQCKLSY 240
           P+ + Y   +  P+ + VTVT  TL+F+ +  KLS+
Sbjct: 653 PVGSVYKPVIEAPMGVNVTVTPSTLVFNAYTRKLSF 688


>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278
          Length = 365

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 664 LKHVFSYMXYPXVSSPNRMHSSV---VITETSVKNPL*IYVSTPPTYNIVTLFYQFTV 500
           ++H    + Y  +   NR  +S    + +    ++PL    +TPP++ + TL+Y +T+
Sbjct: 308 IRHWMLKLPYCSLEFVNRERNSAADALASHVHARDPLFQSYTTPPSWLVNTLYYPYTI 365


>At1g25530.1 68414.m03170 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter GI:2576361 from [Arabidopsis thaliana];
           contains Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 440

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 355 LKSHIRFSTTVNINGISLYVVLTILYVDIYVGLRGYVTRTITY 227
           +K   RFS T  +N IS+ V + I+      GLR  +  + TY
Sbjct: 394 IKKPRRFSVTWFVNWISIIVGVFIMLASTIGGLRNIIADSSTY 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,087
Number of Sequences: 28952
Number of extensions: 230622
Number of successful extensions: 374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)