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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1326
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   205   4e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    97   2e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    95   8e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    83   5e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    69   8e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    56   5e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    56   5e-09
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    32   0.088
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.35 
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    28   1.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   1.9  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    27   3.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.3  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   4.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.8  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   5.8  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   5.8  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.6  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   7.6  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  205 bits (501), Expect = 4e-54
 Identities = 113/193 (58%), Positives = 122/193 (63%)
 Frame = +2

Query: 89  DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGD  ++K
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448
                                 +     FYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62  RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121

Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628
           I+FETFN PA YVAIQAVLS                     VPIYE     P        
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYAL-PHAIMRLDL 180

Query: 629 PVCDLQDYLMKIL 667
              DL DYLMKIL
Sbjct: 181 AGRDLTDYLMKIL 193


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 63/172 (36%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
 Frame = +2

Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKXXXXXX 286
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD +VG    A+      
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGS--EAQNLRGLL 69

Query: 287 XXXXXXXXXLTGMTWRRFGIIPFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIM 454
                    +    W     I  Y     +L   PEEHP+LLTE PL    N+EK+ +  
Sbjct: 70  KIQRPIERGII-QNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYF 128

Query: 455 FETFNTPAMYVAIQAVL---SCTRPVVPPVSCWTPATVSPTPVPIYERIRTP 601
           +ET N PA+  ++Q VL   +  R     + C    T S   VPIY+    P
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIP 177


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 95.1 bits (226), Expect = 8e-21
 Identities = 56/140 (40%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
 Frame = +2

Query: 95  EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHRAK 268
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VGD   A 
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61

Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448
                                 +     F+ +L++ P    +LLTE P+NP ANREKM +
Sbjct: 62  RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121

Query: 449 IMFETFNTPAMYVAIQAVLS 508
            MFE +    +YVAIQAVLS
Sbjct: 122 TMFERYGFGGVYVAIQAVLS 141



 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 29/104 (27%), Positives = 53/104 (50%)
 Frame = +1

Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQR 435
           A++ R +L +KYP+E+GI+ ++++M ++W +TF +     PRG           P   + 
Sbjct: 58  AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANRE 117

Query: 436 EDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIVLDSGDGVSH 567
           +                   +   +YA G ++G+V+DSGDGV+H
Sbjct: 118 KMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTH 161


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
 Frame = +2

Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV---GDGH---- 259
           +++DNG+G  K G+AG+DAP  VFP+++   R  G   G  +  K SY+   G GH    
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66

Query: 260 RAKXXXXXXXXXXXXXXXLTGMT------------W---RRFGIIPFYNELRVAPEEHPV 394
           RA                  G +            W    RF     +  LR  PE+H  
Sbjct: 67  RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126

Query: 395 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508
           LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLA 164



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
 Frame = +1

Query: 280 TLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQREDDPDHVR 459
           +L YPI HG + NWD ME+ W  +  +   C P           P    + RE+  + + 
Sbjct: 89  SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLT-EPPLNPPENRENTAEIMF 147

Query: 460 NIQHARHVRRHPSRALVYASGRT---------TGIVLDSGDGVSH 567
              +   +       L  A+  T         TG V+DSGDGV+H
Sbjct: 148 ESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 43/135 (31%), Positives = 65/135 (48%)
 Frame = +2

Query: 92  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKX 271
           +EV+A+V+D GS   + GF+G+D P+ V PS  G       + G    + Y+   +    
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64

Query: 272 XXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 451
                         +T   WR +G+     +L+  P EHP+L+TE   NP  NR K  + 
Sbjct: 65  IKNAIRNGWVENWDVTVDLWR-YGL---EQQLKTNPLEHPILITEPFDNPPENRVKTLET 120

Query: 452 MFETFNTPAMYVAIQ 496
           MFE+   PA Y+A Q
Sbjct: 121 MFESLRCPATYLAKQ 135


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
 Frame = +2

Query: 92  EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKX 271
           EE+ +LV+D GS   + G+AG+++P  + PS      + GV   +  ++ YV D  +   
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61

Query: 272 XXXXXXXXXXXXXXL------TGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANR 433
                         +      T  TW R G+     +L+V P E+ +++TE   NP++ R
Sbjct: 62  PIPGMEVKNGKSNGIIQDWESTLYTWER-GL---KEKLQVNPTEYAMMITEPSWNPQSVR 117

Query: 434 EKMTQIMFETFNTPAMYVAIQAV 502
           +++ +  FE  + PA Y+  QAV
Sbjct: 118 QQIMEAAFEQLHVPAFYLTKQAV 140


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 34/134 (25%), Positives = 62/134 (46%)
 Frame = +2

Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKXXXXXX 286
           LV+DNGS   +AG+ G+  P+ VF ++V R R +     + +  + VG+    +      
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82

Query: 287 XXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 466
                    ++        +   + +L +   EHP+ +TE   NP   R  MT+++FE +
Sbjct: 83  ARSPFERNVISNWDLMEQVLDYTFLKLGIDRMEHPICMTEPLANPTYVRSTMTELLFELY 142

Query: 467 NTPAMYVAIQAVLS 508
           N P++   I  + S
Sbjct: 143 NAPSVAYGIDGLFS 156



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 292 PIEHGIVTNWDDMEKIWHHTFLQ 360
           P E  +++NWD ME++  +TFL+
Sbjct: 86  PFERNVISNWDLMEQVLDYTFLK 108


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = +2

Query: 353  FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 496
            +Y  L    E+HP+LLT+  A L P+ +  ++ +I  ++ NTP +    VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 249 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88
           PT  S  P+ PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 324 IPVSDDSVFDGVFEGQDTSFALCPSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 145
           +P  + +V        +TSFAL  +    S    PT +      P +E +    +S+PA 
Sbjct: 63  LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122

Query: 144 PALHIP 127
           P L+ P
Sbjct: 123 PQLNSP 128


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 251 LLHKSPSVPYRPSRPDGGAFPRSRGTR 171
           L+ K+PS PY  SRP   A   S  TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -2

Query: 612 GWRGGVRILS*MGTGVGDTVAGVQHDTGGTTGR 514
           G RGG R  S  G G GDTV       GG  GR
Sbjct: 128 GGRGG-RYGSSGGRGAGDTVVSRSSGAGGARGR 159


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 252 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 136
           S T +SF   P+PT  P    LPT   NT +    P+ PAL
Sbjct: 64  SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 395 LLTEAPLNPKANREKMTQIMFETFN 469
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 134 TYRSHCLLPTRQLLRRTS*ISEI 66
           TYR H  +PT  LL  T  +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 583 VDGHGCGRHRRRSPARYRW 527
           +DGH    H  R PA  +W
Sbjct: 69  IDGHSIDVHNERDPANIKW 87


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 292 PIEHGIVTNWDDMEKIWHHTF 354
           PI+ G V +W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 551 PESSTIPVVRPDAYTRARLGWRRTWR 474
           PE   + ++R D+Y R   GW R  R
Sbjct: 611 PEGVRVNIMRDDSYYRQNRGWYRNNR 636


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 473 PAMYVAIQAVLSCTRPVVPPVSCWT 547
           P +Y    ++L   +P+V  ++CWT
Sbjct: 454 PELYPYFLSLLDSKKPLVRTITCWT 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,642
Number of Sequences: 5004
Number of extensions: 72243
Number of successful extensions: 237
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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