Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1326
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 205 4e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 8e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 83 5e-17
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 8e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 5e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 5e-09
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.088
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.35
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.9
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 3.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.8
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 26 5.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 5.8
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.6
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 205 bits (501), Expect = 4e-54
Identities = 113/193 (58%), Positives = 122/193 (63%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGD ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448
+ FYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628
I+FETFN PA YVAIQAVLS VPIYE P
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYAL-PHAIMRLDL 180
Query: 629 PVCDLQDYLMKIL 667
DL DYLMKIL
Sbjct: 181 AGRDLTDYLMKIL 193
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.1 bits (231), Expect = 2e-21
Identities = 63/172 (36%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKXXXXXX 286
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG A+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGS--EAQNLRGLL 69
Query: 287 XXXXXXXXXLTGMTWRRFGIIPFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIM 454
+ W I Y +L PEEHP+LLTE PL N+EK+ +
Sbjct: 70 KIQRPIERGII-QNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYF 128
Query: 455 FETFNTPAMYVAIQAVL---SCTRPVVPPVSCWTPATVSPTPVPIYERIRTP 601
+ET N PA+ ++Q VL + R + C T S VPIY+ P
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIP 177
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.1 bits (226), Expect = 8e-21
Identities = 56/140 (40%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Frame = +2
Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHRAK 268
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGD A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448
+ F+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 449 IMFETFNTPAMYVAIQAVLS 508
MFE + +YVAIQAVLS
Sbjct: 122 TMFERYGFGGVYVAIQAVLS 141
Score = 56.0 bits (129), Expect = 5e-09
Identities = 29/104 (27%), Positives = 53/104 (50%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQR 435
A++ R +L +KYP+E+GI+ ++++M ++W +TF + PRG P +
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANRE 117
Query: 436 EDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIVLDSGDGVSH 567
+ + +YA G ++G+V+DSGDGV+H
Sbjct: 118 KMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTH 161
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 82.6 bits (195), Expect = 5e-17
Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 24/158 (15%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV---GDGH---- 259
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ G GH
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 260 RAKXXXXXXXXXXXXXXXLTGMT------------W---RRFGIIPFYNELRVAPEEHPV 394
RA G + W RF + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 395 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLA 164
Score = 42.3 bits (95), Expect = 6e-05
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Frame = +1
Query: 280 TLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQREDDPDHVR 459
+L YPI HG + NWD ME+ W + + C P P + RE+ + +
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLT-EPPLNPPENRENTAEIMF 147
Query: 460 NIQHARHVRRHPSRALVYASGRT---------TGIVLDSGDGVSH 567
+ + L A+ T TG V+DSGDGV+H
Sbjct: 148 ESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 68.5 bits (160), Expect = 8e-13
Identities = 43/135 (31%), Positives = 65/135 (48%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKX 271
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64
Query: 272 XXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 451
+T WR +G+ +L+ P EHP+L+TE NP NR K +
Sbjct: 65 IKNAIRNGWVENWDVTVDLWR-YGL---EQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 452 MFETFNTPAMYVAIQ 496
MFE+ PA Y+A Q
Sbjct: 121 MFESLRCPATYLAKQ 135
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.0 bits (129), Expect = 5e-09
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKX 271
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV D +
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 272 XXXXXXXXXXXXXXL------TGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANR 433
+ T TW R G+ +L+V P E+ +++TE NP++ R
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWER-GL---KEKLQVNPTEYAMMITEPSWNPQSVR 117
Query: 434 EKMTQIMFETFNTPAMYVAIQAV 502
+++ + FE + PA Y+ QAV
Sbjct: 118 QQIMEAAFEQLHVPAFYLTKQAV 140
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 56.0 bits (129), Expect = 5e-09
Identities = 34/134 (25%), Positives = 62/134 (46%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKXXXXXX 286
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG+ +
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 287 XXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 466
++ + + +L + EHP+ +TE NP R MT+++FE +
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFLKLGIDRMEHPICMTEPLANPTYVRSTMTELLFELY 142
Query: 467 NTPAMYVAIQAVLS 508
N P++ I + S
Sbjct: 143 NAPSVAYGIDGLFS 156
Score = 31.1 bits (67), Expect = 0.15
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTFLQ 360
P E +++NWD ME++ +TFL+
Sbjct: 86 PFERNVISNWDLMEQVLDYTFLK 108
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.088
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 353 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 496
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 249 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -2
Query: 324 IPVSDDSVFDGVFEGQDTSFALCPSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 145
+P + +V +TSFAL + S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 144 PALHIP 127
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 251 LLHKSPSVPYRPSRPDGGAFPRSRGTR 171
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -2
Query: 612 GWRGGVRILS*MGTGVGDTVAGVQHDTGGTTGR 514
G RGG R S G G GDTV GG GR
Sbjct: 128 GGRGG-RYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 252 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 136
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 395 LLTEAPLNPKANREKMTQIMFETFN 469
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 134 TYRSHCLLPTRQLLRRTS*ISEI 66
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 583 VDGHGCGRHRRRSPARYRW 527
+DGH H R PA +W
Sbjct: 69 IDGHSIDVHNERDPANIKW 87
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 5.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTF 354
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 551 PESSTIPVVRPDAYTRARLGWRRTWR 474
PE + ++R D+Y R GW R R
Sbjct: 611 PEGVRVNIMRDDSYYRQNRGWYRNNR 636
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 473 PAMYVAIQAVLSCTRPVVPPVSCWT 547
P +Y ++L +P+V ++CWT
Sbjct: 454 PELYPYFLSLLDSKKPLVRTITCWT 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,642
Number of Sequences: 5004
Number of extensions: 72243
Number of successful extensions: 237
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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