BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1326 (679 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 205 4e-54 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 8e-21 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 83 5e-17 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 8e-13 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 5e-09 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 5e-09 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.088 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.35 SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.1 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.9 SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 27 3.3 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.3 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.4 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.8 SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 26 5.8 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 5.8 SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.6 SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 7.6 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 205 bits (501), Expect = 4e-54 Identities = 113/193 (58%), Positives = 122/193 (63%) Frame = +2 Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGD ++K Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448 + FYNELRVAPEEHP LLTEAPLNPK+NREKMTQ Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121 Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628 I+FETFN PA YVAIQAVLS VPIYE P Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYAL-PHAIMRLDL 180 Query: 629 PVCDLQDYLMKIL 667 DL DYLMKIL Sbjct: 181 AGRDLTDYLMKIL 193 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 97.1 bits (231), Expect = 2e-21 Identities = 63/172 (36%), Positives = 85/172 (49%), Gaps = 7/172 (4%) Frame = +2 Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKXXXXXX 286 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG A+ Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGS--EAQNLRGLL 69 Query: 287 XXXXXXXXXLTGMTWRRFGIIPFY----NELRVAPEEHPVLLTEAPLNPKANREKMTQIM 454 + W I Y +L PEEHP+LLTE PL N+EK+ + Sbjct: 70 KIQRPIERGII-QNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYF 128 Query: 455 FETFNTPAMYVAIQAVL---SCTRPVVPPVSCWTPATVSPTPVPIYERIRTP 601 +ET N PA+ ++Q VL + R + C T S VPIY+ P Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS---VPIYDGFSIP 177 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 95.1 bits (226), Expect = 8e-21 Identities = 56/140 (40%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Frame = +2 Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHRAK 268 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGD A Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61 Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448 + F+ +L++ P +LLTE P+NP ANREKM + Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121 Query: 449 IMFETFNTPAMYVAIQAVLS 508 MFE + +YVAIQAVLS Sbjct: 122 TMFERYGFGGVYVAIQAVLS 141 Score = 56.0 bits (129), Expect = 5e-09 Identities = 29/104 (27%), Positives = 53/104 (50%) Frame = +1 Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQR 435 A++ R +L +KYP+E+GI+ ++++M ++W +TF + PRG P + Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANRE 117 Query: 436 EDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIVLDSGDGVSH 567 + + +YA G ++G+V+DSGDGV+H Sbjct: 118 KMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTH 161 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 82.6 bits (195), Expect = 5e-17 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 24/158 (15%) Frame = +2 Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV---GDGH---- 259 +++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ G GH Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66 Query: 260 RAKXXXXXXXXXXXXXXXLTGMT------------W---RRFGIIPFYNELRVAPEEHPV 394 RA G + W RF + LR PE+H Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126 Query: 395 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508 LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+ Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLA 164 Score = 42.3 bits (95), Expect = 6e-05 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 9/105 (8%) Frame = +1 Query: 280 TLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQREDDPDHVR 459 +L YPI HG + NWD ME+ W + + C P P + RE+ + + Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLT-EPPLNPPENRENTAEIMF 147 Query: 460 NIQHARHVRRHPSRALVYASGRT---------TGIVLDSGDGVSH 567 + + L A+ T TG V+DSGDGV+H Sbjct: 148 ESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 68.5 bits (160), Expect = 8e-13 Identities = 43/135 (31%), Positives = 65/135 (48%) Frame = +2 Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKX 271 +EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ + Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64 Query: 272 XXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 451 +T WR +G+ +L+ P EHP+L+TE NP NR K + Sbjct: 65 IKNAIRNGWVENWDVTVDLWR-YGL---EQQLKTNPLEHPILITEPFDNPPENRVKTLET 120 Query: 452 MFETFNTPAMYVAIQ 496 MFE+ PA Y+A Q Sbjct: 121 MFESLRCPATYLAKQ 135 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 56.0 bits (129), Expect = 5e-09 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 6/143 (4%) Frame = +2 Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKX 271 EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV D + Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61 Query: 272 XXXXXXXXXXXXXXL------TGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANR 433 + T TW R G+ +L+V P E+ +++TE NP++ R Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWER-GL---KEKLQVNPTEYAMMITEPSWNPQSVR 117 Query: 434 EKMTQIMFETFNTPAMYVAIQAV 502 +++ + FE + PA Y+ QAV Sbjct: 118 QQIMEAAFEQLHVPAFYLTKQAV 140 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 56.0 bits (129), Expect = 5e-09 Identities = 34/134 (25%), Positives = 62/134 (46%) Frame = +2 Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAKXXXXXX 286 LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG+ + Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82 Query: 287 XXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 466 ++ + + +L + EHP+ +TE NP R MT+++FE + Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFLKLGIDRMEHPICMTEPLANPTYVRSTMTELLFELY 142 Query: 467 NTPAMYVAIQAVLS 508 N P++ I + S Sbjct: 143 NAPSVAYGIDGLFS 156 Score = 31.1 bits (67), Expect = 0.15 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +1 Query: 292 PIEHGIVTNWDDMEKIWHHTFLQ 360 P E +++NWD ME++ +TFL+ Sbjct: 86 PFERNVISNWDLMEQVLDYTFLK 108 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 31.9 bits (69), Expect = 0.088 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +2 Query: 353 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 496 +Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 29.9 bits (64), Expect = 0.35 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -2 Query: 249 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 88 PT S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 28.3 bits (60), Expect = 1.1 Identities = 18/66 (27%), Positives = 29/66 (43%) Frame = -2 Query: 324 IPVSDDSVFDGVFEGQDTSFALCPSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 145 +P + +V +TSFAL + S PT + P +E + +S+PA Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122 Query: 144 PALHIP 127 P L+ P Sbjct: 123 PQLNSP 128 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 27.5 bits (58), Expect = 1.9 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 251 LLHKSPSVPYRPSRPDGGAFPRSRGTR 171 L+ K+PS PY SRP A S TR Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335 >SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schizosaccharomyces pombe|chr 1|||Manual Length = 567 Score = 26.6 bits (56), Expect = 3.3 Identities = 16/33 (48%), Positives = 16/33 (48%) Frame = -2 Query: 612 GWRGGVRILS*MGTGVGDTVAGVQHDTGGTTGR 514 G RGG R S G G GDTV GG GR Sbjct: 128 GGRGG-RYGSSGGRGAGDTVVSRSSGAGGARGR 159 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.6 bits (56), Expect = 3.3 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -2 Query: 252 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 136 S T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.2 bits (55), Expect = 4.4 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +2 Query: 395 LLTEAPLNPKANREKMTQIMFETFN 469 +L APL+ + +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 25.8 bits (54), Expect = 5.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 134 TYRSHCLLPTRQLLRRTS*ISEI 66 TYR H +PT LL T +SEI Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190 >SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 335 Score = 25.8 bits (54), Expect = 5.8 Identities = 8/19 (42%), Positives = 10/19 (52%) Frame = -1 Query: 583 VDGHGCGRHRRRSPARYRW 527 +DGH H R PA +W Sbjct: 69 IDGHSIDVHNERDPANIKW 87 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 25.8 bits (54), Expect = 5.8 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = +1 Query: 292 PIEHGIVTNWDDMEKIWHHTF 354 PI+ G V +W+ ++ W H + Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133 >SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 682 Score = 25.4 bits (53), Expect = 7.6 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -3 Query: 551 PESSTIPVVRPDAYTRARLGWRRTWR 474 PE + ++R D+Y R GW R R Sbjct: 611 PEGVRVNIMRDDSYYRQNRGWYRNNR 636 >SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pombe|chr 1|||Manual Length = 910 Score = 25.4 bits (53), Expect = 7.6 Identities = 8/25 (32%), Positives = 15/25 (60%) Frame = +2 Query: 473 PAMYVAIQAVLSCTRPVVPPVSCWT 547 P +Y ++L +P+V ++CWT Sbjct: 454 PELYPYFLSLLDSKKPLVRTITCWT 478 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,103,642 Number of Sequences: 5004 Number of extensions: 72243 Number of successful extensions: 237 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 225 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 311890690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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