Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1326
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 224 6e-59
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 219 1e-57
SB_56| Best HMM Match : Actin (HMM E-Value=0) 218 4e-57
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 217 9e-57
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 213 8e-56
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 3e-27
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 3e-16
SB_54| Best HMM Match : Actin (HMM E-Value=0) 80 2e-15
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 70 2e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 7e-07
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 47 1e-05
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 43 2e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 33 0.28
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.65
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 2.0
SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 2.6
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 2.6
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 29 2.6
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.6
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 29 3.5
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 3.5
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 3.5
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 28 6.0
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45) 28 8.0
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 28 8.0
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 224 bits (547), Expect = 6e-59
Identities = 123/196 (62%), Positives = 129/196 (65%)
Frame = +2
Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHR 262
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 263 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKM 442
+K + FYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 443 TQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASX 622
TQIMFETFN+PAMYVAIQAVLS VPIYE P
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRL 179
Query: 623 T*PVCDLQDYLMKILT 670
DL DYLMKILT
Sbjct: 180 DLAGRDLTDYLMKILT 195
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 219 bits (536), Expect = 1e-57
Identities = 122/196 (62%), Positives = 128/196 (65%)
Frame = +2
Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHR 262
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 263 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKM 442
+K + FYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 443 TQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASX 622
TQIMFETFN+PAMYVAIQAVLS VPIYE P
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAIIRL 179
Query: 623 T*PVCDLQDYLMKILT 670
DL DYLMKILT
Sbjct: 180 DLAGRDLTDYLMKILT 195
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 218 bits (532), Expect = 4e-57
Identities = 121/194 (62%), Positives = 127/194 (65%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448
+ FYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628
IMFETFN+PAMYVAIQAVLS VPIYE P
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRLDL 180
Query: 629 PVCDLQDYLMKILT 670
DL DYLMKILT
Sbjct: 181 AGRDLTDYLMKILT 194
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 217 bits (529), Expect = 9e-57
Identities = 120/194 (61%), Positives = 127/194 (65%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448
+ FYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628
IMFETFN+PAMYVAIQAVLS VPIYE P
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRLDL 180
Query: 629 PVCDLQDYLMKILT 670
DL DYLMKILT
Sbjct: 181 AGRDLTDYLMKILT 194
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 213 bits (521), Expect = 8e-56
Identities = 104/142 (73%), Positives = 112/142 (78%)
Frame = +2
Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHR 262
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 263 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKM 442
+K + FYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 443 TQIMFETFNTPAMYVAIQAVLS 508
TQIMFETFN+PAMYVAIQAVLS
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLS 142
Score = 106 bits (254), Expect = 2e-23
Identities = 55/105 (52%), Positives = 61/105 (58%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQR 435
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF P P P+ +
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 436 EDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIVLDSGDGVSHT 570
+ + +YASGRTTGIV+DSGDGVSHT
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHT 163
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 118 bits (285), Expect = 3e-27
Identities = 53/60 (88%), Positives = 58/60 (96%)
Frame = +2
Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD ++K
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Score = 67.7 bits (158), Expect = 8e-12
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 354
AQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 51.6 bits (118), Expect = 6e-07
Identities = 37/81 (45%), Positives = 40/81 (49%)
Frame = +2
Query: 428 NREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPR 607
N + M +IMFETFN+PAMYVAIQAVLS VPIYE P
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PH 136
Query: 608 HPASXT*PVCDLQDYLMKILT 670
DL DYLMKILT
Sbjct: 137 AIIRLDLAGRDLTDYLMKILT 157
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 82.6 bits (195), Expect = 3e-16
Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Frame = +2
Query: 101 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHRAKXX 274
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGD
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 275 XXXXXXXXXXXXXLTGMTWRRFGIIPF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 451
+ F +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 452 MFETFNTPAMYVAIQAVLS 508
MFE + +Y+AIQAVL+
Sbjct: 127 MFENYQFEGVYIAIQAVLT 145
Score = 58.8 bits (136), Expect = 4e-09
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFLQ*AA-CRPRGTPSPAH*GSPQPQGQQ 432
A R +L + YP+++GIV NWDDM+ +W +TF + PR T P +
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR 120
Query: 433 REDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIVLDSGDGVSH 567
+ N Q + +YA G TG+V+DSGDGV+H
Sbjct: 121 EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTH 165
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 79.8 bits (188), Expect = 2e-15
Identities = 34/51 (66%), Positives = 44/51 (86%)
Frame = +2
Query: 356 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508
+++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMA 2186
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 208
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 508 VYASGRTTGIVLDSGDGVSHT 570
+YASGRTTG V D GDGVSHT
Sbjct: 2187 LYASGRTTGTVFDCGDGVSHT 2207
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +2
Query: 383 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLS
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLS 167
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/21 (76%), Positives = 21/21 (100%)
Frame = +1
Query: 508 VYASGRTTGIVLDSGDGVSHT 570
+YA+GRTTG+VLD+GDGVSH+
Sbjct: 168 LYATGRTTGVVLDAGDGVSHS 188
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 208
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 77 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 223
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +2
Query: 386 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508
HP+L++EA N + REK+T++MFE +N PA ++ +VL+
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLT 74
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/74 (41%), Positives = 36/74 (48%)
Frame = +2
Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628
IMFE FN+PA+YVAIQAVLS + VPIYE P
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYAL-PHAILRLDL 59
Query: 629 PVCDLQDYLMKILT 670
DL DYLMK++T
Sbjct: 60 AGRDLTDYLMKLMT 73
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 508 VYASGRTTGIVLDSGDGVSH 567
+YASGRTTG+V DSGDGVSH
Sbjct: 21 LYASGRTTGVVFDSGDGVSH 40
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 205 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 89
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 33.1 bits (72), Expect = 0.21
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 359 NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVP--P 532
N L++ PE + VL + LN AN + A V A S P VP P
Sbjct: 157 NTLKITPENY-VLTNKQTLNLIANNALLVNTASPHTAHRAFIVTTCASTSTESPAVPVKP 215
Query: 533 VSCWTPATVSPTPVPIYERIRTPPRHPAS 619
S T A +PTP+P+ P AS
Sbjct: 216 ASTPTFAKNAPTPIPLTSVAPESPHPQAS 244
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 286 KYPIEHGIVTNWDDMEKIWHHTFLQ*AACRP 378
K+PI H IV +WD ME+ W + P
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEP 329
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 409 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 501
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 30.3 bits (65), Expect = 1.5
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Frame = +1
Query: 388 PSPAH*GSPQPQGQQREDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIV-----LDSG 552
P+P H P+P G Q + N V R S + SG TG + LDS
Sbjct: 1373 PTPGH--RPEPHGAQYSSGQEQSNN-----EVERADSSTV---SGSDTGAIPRQRTLDSR 1422
Query: 553 DGVSHTRAHLRKDTHSPTPSCVXDLAGLRPPGLPYEDPHPS 675
++ +DT +P+ S + LR + YED PS
Sbjct: 1423 GNITQILRSYIRDTQTPSYSTLEAQPQLRDDVISYEDRLPS 1463
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
V+LSH + H M D +HG RS SCET L T
Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 389 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVV---PPVSCWTPATV 559
P L+T PL +T NTP + +++ T P+V PP+ TP V
Sbjct: 34 PSLVTTTPLLVTTTPSLVTTTPLLVTNTPPLDTTTLPLVTITPPLVITAPPLVTTTPPLV 93
Query: 560 SPTPV 574
+ TP+
Sbjct: 94 TTTPL 98
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
V+LSH + H M D +HG RS SCET L T
Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
V+LSH + H M D +HG RS SCET L T
Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
V+LSH + H M D +HG RS SCET L T
Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 175 VPLDRGKAPPSGRDGRYGTEGLLCRRWAQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 348
V L + +GR+ G+ +CR+ K ++TL + I G+ + D EK+W+H
Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKVWYH 496
Query: 349 T 351
T
Sbjct: 497 T 497
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
V+LSH + H M D +HG RS SCET L T
Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
V+LSH + H M D +HG RS SCET L T
Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = +2
Query: 389 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPT 568
PVL A P A + TQ + P ++ V + P PPV P TV P
Sbjct: 22 PVLTEAATTQPPAPPPEPTQAPVADTDPPTNPPSVVEVTTTQAPPPPPVVTEAPTTV-PP 80
Query: 569 PVPIYERIRTPP 604
PV PP
Sbjct: 81 PVVTDAPTTVPP 92
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 527 PPVSCWTPATVSPTPVPIYERIRTPPRHPASXT 625
PP+ P+ + P P+ + + TPPR P + T
Sbjct: 433 PPLPQPPPSIIPPPTTPLPQTVPTPPRPPTTMT 465
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128
++LSH + H M D +HG RS SCET L T
Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 292 PIEHGIVTNWDDMEKIWHHTF 354
P + G + NWD ++IW +TF
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTF 312
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAV 175
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 407 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVP 577
A P A + + +NTP I + P +PP + TP+ P PVP
Sbjct: 888 ASYQPSAPSSMPAPVPLQPYNTPMP--PISSTPYQAPPTLPPTTLTTPSWSQPVPVP 942
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 180 GNTARGASSPAKPALHIPEPLSTT 109
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
Length = 539
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 527 PPVSCWTPATVSPTPV---PIYERIRTPPRHPASXT*PVCDLQD 649
PP S +P + P P++ + + PRH S T PVC +QD
Sbjct: 311 PPESLPSPPPLPPQDYEEEPLHNKRKVRPRHERSATEPVC-MQD 353
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 443 TQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTP 571
+Q+ E +N P+ + CT +P +TP T TP
Sbjct: 611 SQVNSERYNAPSQSPCTERYTPCTERYIPCTERYTPCTERYTP 653
>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
Length = 481
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 458 ETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPV 574
+ + P + +Q +++ P + P +C TP +SP +
Sbjct: 288 DNYLRPTNHATVQTIVNSLDPSIAPKACCTPNELSPISI 326
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +2
Query: 365 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCW 544
L+ APE P+ EAP PK + ++ Q + TP +Q +L T V
Sbjct: 330 LKKAPEHKPLDEVEAPQFPKLHHVELPQTEKKVDETPRF---VQPLLKKTTVNVKGPDQK 386
Query: 545 TPATVSPTPVPIYERIRTP 601
A P +P + TP
Sbjct: 387 DKAEPEPLHLPKLHHVETP 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,585,160
Number of Sequences: 59808
Number of extensions: 658107
Number of successful extensions: 2360
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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