BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1326 (679 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_56628| Best HMM Match : Actin (HMM E-Value=0) 224 6e-59 SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 219 1e-57 SB_56| Best HMM Match : Actin (HMM E-Value=0) 218 4e-57 SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 217 9e-57 SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 213 8e-56 SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 3e-27 SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 3e-16 SB_54| Best HMM Match : Actin (HMM E-Value=0) 80 2e-15 SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 70 2e-12 SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09 SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 7e-07 SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 47 1e-05 SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 43 2e-04 SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04 SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21 SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 33 0.28 SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65 SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.65 SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 2.0 SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_21074| Best HMM Match : NadA (HMM E-Value=2) 29 2.6 SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 29 2.6 SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 29 2.6 SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.6 SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 29 3.5 SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 3.5 SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 3.5 SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6 SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0 SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0 SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 28 6.0 SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0 SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45) 28 8.0 SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 28 8.0 >SB_56628| Best HMM Match : Actin (HMM E-Value=0) Length = 376 Score = 224 bits (547), Expect = 6e-59 Identities = 123/196 (62%), Positives = 129/196 (65%) Frame = +2 Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHR 262 MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD + Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 263 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKM 442 +K + FYNELRVAPEEHPVLLTEAPLNPKANREKM Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120 Query: 443 TQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASX 622 TQIMFETFN+PAMYVAIQAVLS VPIYE P Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRL 179 Query: 623 T*PVCDLQDYLMKILT 670 DL DYLMKILT Sbjct: 180 DLAGRDLTDYLMKILT 195 >SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 376 Score = 219 bits (536), Expect = 1e-57 Identities = 122/196 (62%), Positives = 128/196 (65%) Frame = +2 Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHR 262 M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD + Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 263 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKM 442 +K + FYNELRVAPEEHPVLLTEAPLNPKANREKM Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120 Query: 443 TQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASX 622 TQIMFETFN+PAMYVAIQAVLS VPIYE P Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAIIRL 179 Query: 623 T*PVCDLQDYLMKILT 670 DL DYLMKILT Sbjct: 180 DLAGRDLTDYLMKILT 195 >SB_56| Best HMM Match : Actin (HMM E-Value=0) Length = 375 Score = 218 bits (532), Expect = 4e-57 Identities = 121/194 (62%), Positives = 127/194 (65%) Frame = +2 Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268 ++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD ++K Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448 + FYNELRVAPEEHPVLLTEAPLNPKANREKMTQ Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121 Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628 IMFETFN+PAMYVAIQAVLS VPIYE P Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRLDL 180 Query: 629 PVCDLQDYLMKILT 670 DL DYLMKILT Sbjct: 181 AGRDLTDYLMKILT 194 >SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 375 Score = 217 bits (529), Expect = 9e-57 Identities = 120/194 (61%), Positives = 127/194 (65%) Frame = +2 Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268 +++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD ++K Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Query: 269 XXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 448 + FYNELRVAPEEHPVLLTEAPLNPKANREKMTQ Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121 Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628 IMFETFN+PAMYVAIQAVLS VPIYE P Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PHAILRLDL 180 Query: 629 PVCDLQDYLMKILT 670 DL DYLMKILT Sbjct: 181 AGRDLTDYLMKILT 194 >SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 349 Score = 213 bits (521), Expect = 8e-56 Identities = 104/142 (73%), Positives = 112/142 (78%) Frame = +2 Query: 83 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHR 262 M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD + Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60 Query: 263 AKXXXXXXXXXXXXXXXLTGMTWRRFGIIPFYNELRVAPEEHPVLLTEAPLNPKANREKM 442 +K + FYNELRVAPEEHPVLLTEAPLNPKANREKM Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120 Query: 443 TQIMFETFNTPAMYVAIQAVLS 508 TQIMFETFN+PAMYVAIQAVLS Sbjct: 121 TQIMFETFNSPAMYVAIQAVLS 142 Score = 106 bits (254), Expect = 2e-23 Identities = 55/105 (52%), Positives = 61/105 (58%) Frame = +1 Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFLQ*AACRPRGTPSPAH*GSPQPQGQQR 435 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF P P P+ + Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118 Query: 436 EDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIVLDSGDGVSHT 570 + + +YASGRTTGIV+DSGDGVSHT Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHT 163 >SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 118 bits (285), Expect = 3e-27 Identities = 53/60 (88%), Positives = 58/60 (96%) Frame = +2 Query: 89 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDGHRAK 268 D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD ++K Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61 Score = 67.7 bits (158), Expect = 8e-12 Identities = 30/33 (90%), Positives = 30/33 (90%) Frame = +1 Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 354 AQSKRGILTLKYPIEHGIVTNWDDMEKI TF Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90 Score = 51.6 bits (118), Expect = 6e-07 Identities = 37/81 (45%), Positives = 40/81 (49%) Frame = +2 Query: 428 NREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPR 607 N + M +IMFETFN+PAMYVAIQAVLS VPIYE P Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYAL-PH 136 Query: 608 HPASXT*PVCDLQDYLMKILT 670 DL DYLMKILT Sbjct: 137 AIIRLDLAGRDLTDYLMKILT 157 >SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 82.6 bits (195), Expect = 3e-16 Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 3/139 (2%) Frame = +2 Query: 101 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDGHRAKXX 274 + +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGD Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66 Query: 275 XXXXXXXXXXXXXLTGMTWRRFGIIPF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 451 + F +++ + P VLLTE PLNP NREKM ++ Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126 Query: 452 MFETFNTPAMYVAIQAVLS 508 MFE + +Y+AIQAVL+ Sbjct: 127 MFENYQFEGVYIAIQAVLT 145 Score = 58.8 bits (136), Expect = 4e-09 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Frame = +1 Query: 256 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFLQ*AA-CRPRGTPSPAH*GSPQPQGQQ 432 A R +L + YP+++GIV NWDDM+ +W +TF + PR T P + Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR 120 Query: 433 REDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIVLDSGDGVSH 567 + N Q + +YA G TG+V+DSGDGV+H Sbjct: 121 EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTH 165 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 79.8 bits (188), Expect = 2e-15 Identities = 34/51 (66%), Positives = 44/51 (86%) Frame = +2 Query: 356 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508 +++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++ Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMA 2186 Score = 59.7 bits (138), Expect = 2e-09 Identities = 23/34 (67%), Positives = 30/34 (88%) Frame = +2 Query: 107 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 208 +V+DNGSG CKAG + D++PR VFP+IVGRPRH+ Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130 Score = 40.3 bits (90), Expect = 0.001 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = +1 Query: 508 VYASGRTTGIVLDSGDGVSHT 570 +YASGRTTG V D GDGVSHT Sbjct: 2187 LYASGRTTGTVFDCGDGVSHT 2207 >SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) Length = 367 Score = 69.7 bits (163), Expect = 2e-12 Identities = 28/42 (66%), Positives = 37/42 (88%) Frame = +2 Query: 383 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508 +HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLS Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLS 167 Score = 41.5 bits (93), Expect = 6e-04 Identities = 16/21 (76%), Positives = 21/21 (100%) Frame = +1 Query: 508 VYASGRTTGIVLDSGDGVSHT 570 +YA+GRTTG+VLD+GDGVSH+ Sbjct: 168 LYATGRTTGVVLDAGDGVSHS 188 >SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) Length = 1392 Score = 59.7 bits (138), Expect = 2e-09 Identities = 27/39 (69%), Positives = 29/39 (74%) Frame = +2 Query: 92 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 208 E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392 >SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) Length = 921 Score = 51.2 bits (117), Expect = 7e-07 Identities = 21/49 (42%), Positives = 32/49 (65%) Frame = +2 Query: 77 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 223 FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741 >SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) Length = 240 Score = 47.2 bits (107), Expect = 1e-05 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = +2 Query: 386 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 508 HP+L++EA N + REK+T++MFE +N PA ++ +VL+ Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLT 74 >SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) Length = 152 Score = 43.2 bits (97), Expect = 2e-04 Identities = 31/74 (41%), Positives = 36/74 (48%) Frame = +2 Query: 449 IMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVPIYERIRTPPRHPASXT* 628 IMFE FN+PA+YVAIQAVLS + VPIYE P Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYAL-PHAILRLDL 59 Query: 629 PVCDLQDYLMKILT 670 DL DYLMK++T Sbjct: 60 AGRDLTDYLMKLMT 73 Score = 41.9 bits (94), Expect = 5e-04 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = +1 Query: 508 VYASGRTTGIVLDSGDGVSH 567 +YASGRTTG+V DSGDGVSH Sbjct: 21 LYASGRTTGVVFDSGDGVSH 40 >SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 198 Score = 41.9 bits (94), Expect = 5e-04 Identities = 21/39 (53%), Positives = 27/39 (69%) Frame = -1 Query: 205 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 89 MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39 >SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 650 Score = 33.1 bits (72), Expect = 0.21 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Frame = +2 Query: 359 NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVP--P 532 N L++ PE + VL + LN AN + A V A S P VP P Sbjct: 157 NTLKITPENY-VLTNKQTLNLIANNALLVNTASPHTAHRAFIVTTCASTSTESPAVPVKP 215 Query: 533 VSCWTPATVSPTPVPIYERIRTPPRHPAS 619 S T A +PTP+P+ P AS Sbjct: 216 ASTPTFAKNAPTPIPLTSVAPESPHPQAS 244 >SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) Length = 372 Score = 32.7 bits (71), Expect = 0.28 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 286 KYPIEHGIVTNWDDMEKIWHHTFLQ*AACRP 378 K+PI H IV +WD ME+ W + P Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEP 329 >SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 120 Score = 31.5 bits (68), Expect = 0.65 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -2 Query: 180 GNTARGASSPAKPALHIPEPLSTT 109 GNT R PAKPAL++P P S T Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103 >SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) Length = 170 Score = 31.5 bits (68), Expect = 0.65 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -2 Query: 180 GNTARGASSPAKPALHIPEPLSTT 109 GNT R PAKPAL++P P S T Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103 >SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 749 Score = 30.3 bits (65), Expect = 1.5 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 180 GNTARGASSPAKPALHIPEPLSTT 109 GNT R PAKP+L++P P S T Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563 >SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1259 Score = 30.3 bits (65), Expect = 1.5 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +1 Query: 409 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 501 SP P+ R D+P V A HV HPSR Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295 >SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2174 Score = 30.3 bits (65), Expect = 1.5 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 5/101 (4%) Frame = +1 Query: 388 PSPAH*GSPQPQGQQREDDPDHVRNIQHARHVRRHPSRALVYASGRTTGIV-----LDSG 552 P+P H P+P G Q + N V R S + SG TG + LDS Sbjct: 1373 PTPGH--RPEPHGAQYSSGQEQSNN-----EVERADSSTV---SGSDTGAIPRQRTLDSR 1422 Query: 553 DGVSHTRAHLRKDTHSPTPSCVXDLAGLRPPGLPYEDPHPS 675 ++ +DT +P+ S + LR + YED PS Sbjct: 1423 GNITQILRSYIRDTQTPSYSTLEAQPQLRDDVISYEDRLPS 1463 >SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) Length = 272 Score = 29.9 bits (64), Expect = 2.0 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 V+LSH + H M D +HG RS SCET L T Sbjct: 224 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259 >SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 127 Score = 29.5 bits (63), Expect = 2.6 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = +2 Query: 389 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVV---PPVSCWTPATV 559 P L+T PL +T NTP + +++ T P+V PP+ TP V Sbjct: 34 PSLVTTTPLLVTTTPSLVTTTPLLVTNTPPLDTTTLPLVTITPPLVITAPPLVTTTPPLV 93 Query: 560 SPTPV 574 + TP+ Sbjct: 94 TTTPL 98 >SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 591 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 V+LSH + H M D +HG RS SCET L T Sbjct: 419 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454 >SB_21074| Best HMM Match : NadA (HMM E-Value=2) Length = 358 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 V+LSH + H M D +HG RS SCET L T Sbjct: 282 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317 >SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) Length = 339 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 V+LSH + H M D +HG RS SCET L T Sbjct: 260 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295 >SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) Length = 635 Score = 29.5 bits (63), Expect = 2.6 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = +1 Query: 175 VPLDRGKAPPSGRDGRYGTEGLLCRRWAQSKRGILTLKYPIEHGIVTNW--DDMEKIWHH 348 V L + +GR+ G+ +CR+ K ++TL + I G+ + D EK+W+H Sbjct: 441 VTLSQNVVSVTGREESGGSGTQVCRK----KAPLITLSHVIRMGLALSLVSDVKEKVWYH 496 Query: 349 T 351 T Sbjct: 497 T 497 >SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 181 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 V+LSH + H M D +HG RS SCET L T Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137 >SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 402 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 V+LSH + H M D +HG RS SCET L T Sbjct: 102 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137 >SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 458 Score = 29.5 bits (63), Expect = 2.6 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 V+LSH + H M D +HG RS SCET L T Sbjct: 136 VVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171 >SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) Length = 439 Score = 29.1 bits (62), Expect = 3.5 Identities = 22/72 (30%), Positives = 27/72 (37%) Frame = +2 Query: 389 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPT 568 PVL A P A + TQ + P ++ V + P PPV P TV P Sbjct: 22 PVLTEAATTQPPAPPPEPTQAPVADTDPPTNPPSVVEVTTTQAPPPPPVVTEAPTTV-PP 80 Query: 569 PVPIYERIRTPP 604 PV PP Sbjct: 81 PVVTDAPTTVPP 92 >SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 603 Score = 29.1 bits (62), Expect = 3.5 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +2 Query: 527 PPVSCWTPATVSPTPVPIYERIRTPPRHPASXT 625 PP+ P+ + P P+ + + TPPR P + T Sbjct: 433 PPLPQPPPSIIPPPTTPLPQTVPTPPRPPTTMT 465 >SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) Length = 570 Score = 29.1 bits (62), Expect = 3.5 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -1 Query: 238 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 128 ++LSH + H M D +HG RS SCET L T Sbjct: 184 IVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219 >SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) Length = 580 Score = 29.1 bits (62), Expect = 3.5 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +1 Query: 292 PIEHGIVTNWDDMEKIWHHTF 354 P + G + NWD ++IW +TF Sbjct: 292 PFQKGFLVNWDVEKQIWDYTF 312 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 95 EVAALVVDNGSGMCKAGFAGDDAPRAV 175 ++A LV+D G+ K GFA + APR++ Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258 >SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1308 Score = 28.7 bits (61), Expect = 4.6 Identities = 16/57 (28%), Positives = 23/57 (40%) Frame = +2 Query: 407 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPVP 577 A P A + + +NTP I + P +PP + TP+ P PVP Sbjct: 888 ASYQPSAPSSMPAPVPLQPYNTPMP--PISSTPYQAPPTLPPTTLTTPSWSQPVPVP 942 >SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 130 Score = 28.3 bits (60), Expect = 6.0 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 180 GNTARGASSPAKPALHIPEPLSTT 109 GNT R AKPAL++P P S T Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63 >SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 635 Score = 28.3 bits (60), Expect = 6.0 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 180 GNTARGASSPAKPALHIPEPLSTT 109 GNT R PAKP L IP P + T Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91 >SB_39621| Best HMM Match : Extensin_2 (HMM E-Value=0.078) Length = 539 Score = 28.3 bits (60), Expect = 6.0 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 527 PPVSCWTPATVSPTPV---PIYERIRTPPRHPASXT*PVCDLQD 649 PP S +P + P P++ + + PRH S T PVC +QD Sbjct: 311 PPESLPSPPPLPPQDYEEEPLHNKRKVRPRHERSATEPVC-MQD 353 >SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1071 Score = 27.9 bits (59), Expect = 8.0 Identities = 12/43 (27%), Positives = 19/43 (44%) Frame = +2 Query: 443 TQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTP 571 +Q+ E +N P+ + CT +P +TP T TP Sbjct: 611 SQVNSERYNAPSQSPCTERYTPCTERYIPCTERYTPCTERYTP 653 >SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45) Length = 481 Score = 27.9 bits (59), Expect = 8.0 Identities = 9/39 (23%), Positives = 20/39 (51%) Frame = +2 Query: 458 ETFNTPAMYVAIQAVLSCTRPVVPPVSCWTPATVSPTPV 574 + + P + +Q +++ P + P +C TP +SP + Sbjct: 288 DNYLRPTNHATVQTIVNSLDPSIAPKACCTPNELSPISI 326 >SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) Length = 798 Score = 27.9 bits (59), Expect = 8.0 Identities = 22/79 (27%), Positives = 32/79 (40%) Frame = +2 Query: 365 LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSCTRPVVPPVSCW 544 L+ APE P+ EAP PK + ++ Q + TP +Q +L T V Sbjct: 330 LKKAPEHKPLDEVEAPQFPKLHHVELPQTEKKVDETPRF---VQPLLKKTTVNVKGPDQK 386 Query: 545 TPATVSPTPVPIYERIRTP 601 A P +P + TP Sbjct: 387 DKAEPEPLHLPKLHHVETP 405 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,585,160 Number of Sequences: 59808 Number of extensions: 658107 Number of successful extensions: 2360 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 2005 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2325 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1745338465 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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