Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1324
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.6  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    26   4.5  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   7.9  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 266 YNKNQTRKIIVCAITGGRTSCESARVKYL 352
           + K+  +K++VC I+ GRT      + YL
Sbjct: 227 WGKDAWKKVVVCIISDGRTKIHPRTLAYL 255


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 107 KNIFLYTLSRLDVCMCVLTNRFVR 36
           K IF++ LS L + +C +T RF+R
Sbjct: 63  KIIFIFQLSILTLYICCITFRFIR 86


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 266 YNKNQTRKIIVCAITGGRTSCESARVK 346
           +N  QT++ +   +TGG  SC S  +K
Sbjct: 305 HNSLQTKEFVAKNLTGGHASCFSVLLK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,433
Number of Sequences: 5004
Number of extensions: 54391
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)