Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1324
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   2.8  
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 426 GLSIVTTSPPFKPKPTASRQK*AGRRYFTRADSQEVLPPVI 304
           GL+  TTS P K +PT++RQ   G R  TR  S    P  I
Sbjct: 169 GLTGPTTSSPIKGRPTSARQSPQGTRP-TRPSSAHASPSSI 208


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 426  GLSIVTTSPPFKPKPTASRQK*AGRRYFTRADSQEVLPPVI 304
            GL+  TTS P K +PT++RQ   G R  TR  S    P  I
Sbjct: 1750 GLTGPTTSSPIKGRPTSARQSPQGTRP-TRPSSAHASPSSI 1789


>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 489 VTGNHRHLQRKCHHYLRYEF*GLSIVTTSPPFKPKPTASRQK*AGRR 349
           VT     L+R+  +   ++   +S    SP + PKP  SR+K AGR+
Sbjct: 368 VTQYIEKLERELRNLKNHQQRDISKDHVSPQYAPKPLLSRRKHAGRK 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,311,126
Number of Sequences: 59808
Number of extensions: 412195
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)