Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1324
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.53 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   1.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 125 LGIRYLKNIFLYTLSRLDVCMCVLTNRFVRRV 30
           +G  +L  IFL     + VC+ + T+R +RR+
Sbjct: 28  VGFLFLILIFLSVAGNILVCVAIYTDRGLRRI 59


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 257 ITSYNKNQTRKIIVCAITGGRTSCESARVKYLRPAYFCREAVGF 388
           I  Y   Q    ++C+I GG +  +   V    P  F  + V F
Sbjct: 67  INQYGGEQPTLRLLCSIAGGTSESQWEDVTGSTPLTFVNDTVSF 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,757
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)