Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1324
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel...    31   0.98 
At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel...    31   0.98 
At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger) fa...    31   0.98 
At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger) fa...    31   0.98 

>At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC4) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc4) GI:4581203 from [Arabidopsis thaliana]
          Length = 694

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -2

Query: 140 LIL*ALGIRYLKNIFLYTLSRLDVCMCVLTN 48
           L++ A G+ ++  +FLYTLS  D CMC+L +
Sbjct: 95  LLVCATGL-FVDPLFLYTLSVSDTCMCLLVD 124


>At5g54250.1 68418.m06757 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC4) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc4) GI:4581203 from [Arabidopsis thaliana]
          Length = 694

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -2

Query: 140 LIL*ALGIRYLKNIFLYTLSRLDVCMCVLTN 48
           L++ A G+ ++  +FLYTLS  D CMC+L +
Sbjct: 95  LLVCATGL-FVDPLFLYTLSVSDTCMCLLVD 124


>At3g18930.2 68416.m02403 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 411

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 178 NTGASLNTNAPDVLSFRP*VFDI*KIFSYTPYLVSMCACVYLPIALFGA 32
           ++ +S +T++ D+ SF P  FD     SY+PY +       LP+ L+ A
Sbjct: 88  SSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSA 136


>At3g18930.1 68416.m02402 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 411

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 178 NTGASLNTNAPDVLSFRP*VFDI*KIFSYTPYLVSMCACVYLPIALFGA 32
           ++ +S +T++ D+ SF P  FD     SY+PY +       LP+ L+ A
Sbjct: 88  SSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSA 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,848
Number of Sequences: 28952
Number of extensions: 275788
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)