Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1322
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   2.2  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   5.0  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   5.0  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   5.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.0  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   6.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    24   8.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   8.7  

>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 188 IYVNGRNIMWE*GKKY--YVRISGRSGIKSTLHLYDT 292
           + V G  + W   KKY  YVR    +GI   LH+YDT
Sbjct: 3   LLVLGTPLDWPESKKYCDYVR---ENGIMQFLHMYDT 36


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 250 TYPNIIFLPLFPHNISSINIDIYPIQISKII--STEYVLCST 131
           TY N  F+PL+     + NIDIY   +S  +     Y + ST
Sbjct: 137 TYHN--FIPLWEGRYLAANIDIYDEHVSSFVPFGDRYAIFST 176


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 273 PYIYMIQTISIHDFAKAGLVIRVCKRNNHI 362
           P  Y +  + + DF K+G+ +   KRN+ +
Sbjct: 181 PEAYTVGRVFLQDFEKSGVNLESSKRNSFV 210


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 320 FGEIMYRNGLYHINVRYFLFHCVHL 246
           FG++++   LY +  RY  FH V L
Sbjct: 267 FGDLVWVPFLYSLQARYLAFHPVDL 291


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -2

Query: 241  NIIFLPLFPHNISSINIDIYPIQISKIISTEYVLCST*LYRYVDANNFKWEKSLEALV 68
            N   LP+   NI     ++ P+ + +    ++V     L  YVD     W K  E ++
Sbjct: 3179 NTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKLDLLTYVDKLRM-WRKKFENIL 3235


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 314 EIMYRNGLYHINVRYFLFHCVHLS*HNISSLIP 216
           E++ R+G Y+ +V  + F C+    +++  L P
Sbjct: 202 ELLLRSGSYNHSVDLYAFGCIVFEIYSLKPLFP 234


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 164 NNFYGICSMQYLIVSVRRC**LQMGKES-RGISI-VYSRISLVNFYDEISNRPLR 6
           N+   +CS  YL  S      +++  E  + + I  Y R  LVN YDEI N  L+
Sbjct: 345 NSLKSLCSKCYLRTSFPEKYAIKVDFEFLKNVFINTYDRTRLVNDYDEIINFTLK 399


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 178 IQISKIISTEYVLCST*LYRYVDANNF 98
           +++S+  S   V+  T LY  VDANNF
Sbjct: 477 LEMSREESAPLVMHVTKLYNTVDANNF 503


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 161 YFXDLNGVDIYVNGRNIMWE*GKKYYV 241
           +  D +GVD  +N  N MW+  +  YV
Sbjct: 193 HLNDTSGVDFNLNEYNAMWKTSEYRYV 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,693
Number of Sequences: 5004
Number of extensions: 39408
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)