BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1322 (431 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59) 28 2.8 SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44) 27 5.0 SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 27 8.7 SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7 >SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59) Length = 199 Score = 28.3 bits (60), Expect = 2.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +3 Query: 18 IRDFVVKIYK*YSTVYYTNASRLF 89 ++DF+V +Y+ T +Y N RLF Sbjct: 155 LKDFLVVVYRYSETAFYDNTDRLF 178 >SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44) Length = 382 Score = 27.5 bits (58), Expect = 5.0 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%) Frame = -3 Query: 285 YKCKVLFIPLRP-------LILT*YFFPYSHIIFLPLT*ISTPFKS 169 Y+C+V+ P RP IL + S I+ +P+ ++ PFKS Sbjct: 102 YRCRVILNPFRPEMKDFWAFILVGLIWLSSFIVMVPMMVVTKPFKS 147 >SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) Length = 457 Score = 26.6 bits (56), Expect = 8.7 Identities = 9/20 (45%), Positives = 16/20 (80%) Frame = -3 Query: 402 KFLNTNAGNINKKVYGCFVY 343 KFL+T+ G +N ++YG F++ Sbjct: 34 KFLDTSGGKLNYRLYGEFLF 53 >SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 865 Score = 26.6 bits (56), Expect = 8.7 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 60 VYYTNASRLFSHLKLLASTYRY 125 ++Y N R FS LKL S+ RY Sbjct: 342 MFYRNGDRFFSGLKLAVSSERY 363 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,534,717 Number of Sequences: 59808 Number of extensions: 247227 Number of successful extensions: 349 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 338 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 349 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 822495283 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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