Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1322
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59)                  28   2.8  
SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)             27   5.0  
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    27   8.7  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_28791| Best HMM Match : DUF1656 (HMM E-Value=0.59)
          Length = 199

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 18  IRDFVVKIYK*YSTVYYTNASRLF 89
           ++DF+V +Y+   T +Y N  RLF
Sbjct: 155 LKDFLVVVYRYSETAFYDNTDRLF 178


>SB_26982| Best HMM Match : 7tm_1 (HMM E-Value=9.94922e-44)
          Length = 382

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = -3

Query: 285 YKCKVLFIPLRP-------LILT*YFFPYSHIIFLPLT*ISTPFKS 169
           Y+C+V+  P RP        IL    +  S I+ +P+  ++ PFKS
Sbjct: 102 YRCRVILNPFRPEMKDFWAFILVGLIWLSSFIVMVPMMVVTKPFKS 147


>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 402 KFLNTNAGNINKKVYGCFVY 343
           KFL+T+ G +N ++YG F++
Sbjct: 34  KFLDTSGGKLNYRLYGEFLF 53


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 60  VYYTNASRLFSHLKLLASTYRY 125
           ++Y N  R FS LKL  S+ RY
Sbjct: 342 MFYRNGDRFFSGLKLAVSSERY 363


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,717
Number of Sequences: 59808
Number of extensions: 247227
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)