Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1321
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0554 + 26206715-26206780,26206870-26206968,26207054-262072...    27   3.3  
01_05_0449 - 22349299-22349310,22349842-22350011,22350232-223503...    27   3.3  
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20...    26   5.8  
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    25   7.7  
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068...    25   7.7  

>04_04_0554 +
           26206715-26206780,26206870-26206968,26207054-26207274,
           26207489-26207558,26207690-26207769,26207974-26208038,
           26208414-26208607
          Length = 264

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 275 GFVCGAMKVSISSIIVVGKRFVYRSRFD 192
           GFVCG +   I+++I+  KR V +S  D
Sbjct: 160 GFVCGIIGQGIANMIMTAKRSVKKSDED 187


>01_05_0449 -
           22349299-22349310,22349842-22350011,22350232-22350303,
           22351740-22351806,22352516-22352647,22352844-22353070,
           22353150-22353359,22353565-22353687,22353971-22354075,
           22354324-22354435
          Length = 409

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 219 FSDHNNAGNAYFHRSTNKTLI 281
           F +H+NAG+++ H  TN+ ++
Sbjct: 343 FENHDNAGDSWSHSCTNRLIL 363


>02_01_0033 +
           202703-202705,203397-203458,203566-203665,203875-203916,
           204264-204305,204437-204589,206559-207221
          Length = 354

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 108 SSISTPINGKTIINPSTEVRRRINFYKTV 194
           S I++P  G T++N       R+N Y+ +
Sbjct: 326 SDITSPSQGATVVNRMLGATNRLNLYREI 354


>09_04_0501 + 18153252-18153453,18153973-18154224,18154809-18155015,
            18155198-18157046,18157334-18157381,18158222-18158291,
            18158380-18158475,18158583-18158621,18158714-18158924,
            18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 66   IIDTDYPPAASVSYSSISTPIN 131
            +++TD+  AASVSY S  TP N
Sbjct: 970  LVETDH--AASVSYRSAETPTN 989


>05_06_0133 +
           25905455-25905545,25905650-25906202,25906310-25906806,
           25906905-25907043,25907182-25907253,25907344-25907415,
           25907503-25907583,25907899-25908065,25908148-25908416,
           25908512-25908638,25908752-25908820,25908928-25909120,
           25909215-25909707
          Length = 940

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 27  ITILCYLAVARASIIDTDYPPAASVSYSSISTPINGKT-IINPSTEV 164
           + +LC++AVA A ++     P ++  + S+   + GKT  ++  T++
Sbjct: 7   LLLLCFVAVATAGVLQARAQPDSN-GFISVDCGLPGKTGFVDDKTKI 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,373,465
Number of Sequences: 37544
Number of extensions: 123371
Number of successful extensions: 276
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)