Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1321
(291 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23) 27 2.6
SB_24225| Best HMM Match : TF_Otx (HMM E-Value=7.2) 27 3.5
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 26 4.6
SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.6
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8) 26 6.1
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 26 6.1
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25) 25 8.0
SB_40331| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-15) 25 8.0
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52) 25 8.0
SB_30782| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
Length = 1084
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 84 PPAASVSYSSISTPINGKTIINPSTEVRRRINFYKTVEPAPV 209
PPA ++SSI P + PST RR+ + +KT P +
Sbjct: 236 PPAQMGAFSSI-IPRKSPLTLKPSTPSRRKRSGHKTAFPRKI 276
>SB_24225| Best HMM Match : TF_Otx (HMM E-Value=7.2)
Length = 205
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +3
Query: 75 TDYPPAAS-VSYSSISTPINGKT---IINPSTEVRRRINFYKTVEP---APVHETFSDHN 233
+ Y PA S + + IST I T IIN ++ + + + P AP+ + H
Sbjct: 101 SQYQPALSPIQTAPISTSIKPHTDGAIINQQQAPYKQRQYQQALSPIQTAPISTSIKPHT 160
Query: 234 NAGNAYFHRSTNK 272
N+ N H++ K
Sbjct: 161 NSANINQHQAPYK 173
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 26.2 bits (55), Expect = 4.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 84 PPAASVSYSSISTPINGKTIINP 152
PP V + S+ P+N + NP
Sbjct: 731 PPGGPVQFGSVYNPVNNDNVYNP 753
>SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 24 IITILCYLAVARASIIDTDYPPAASVSYSSISTPINGKTIINPSTE 161
++ LC + +A A +ID + VS I T IN ++P++E
Sbjct: 845 LVAALCVIVLAGAELIDFLDCSSRDVSSDMIRTWINQSKSLDPTSE 890
>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
Length = 959
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 QVSSILTIHLQH-QCHILQYLRQSMAKLLSTQALKSEDV*IFTKQSNRLLYTKRFPTTIM 237
Q + L L H QCH L+Q+ T LK + + + + + FPTT++
Sbjct: 862 QCHTTLLKQLHHNQCHTT-LLKQAHHNQCHTTLLKQ----VHHNKCHTIKMVREFPTTVV 916
Query: 238 LEMLT 252
++M+T
Sbjct: 917 MKMMT 921
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +3
Query: 51 VARASIIDTDYPPAASVSYSSISTPINGKTIINPSTEVRRRINFYKT-----VEPAPVHE 215
+AR I Y + S S +S S +NG PS++ + I+ + T P+PV E
Sbjct: 504 MARVQEITNRYLGSPSESSTSQSASLNGSPTERPSSDKKVSIDGFSTSHTSLKSPSPVTE 563
Query: 216 TFSD 227
D
Sbjct: 564 VLMD 567
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +1
Query: 121 RQSMAKLLSTQALKSEDV*IFTKQSNRLLYTKRFPTTIMLEMLTFIAPQTKP*XLQP 291
+Q L+T S T+Q+ L + + PTT T P TKP + P
Sbjct: 265 KQPTTPQLTTTTFPSTKQPTTTQQTTATLPSTKQPTTTQQTTATLPTPSTKPTTVSP 321
>SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)
Length = 389
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = +2
Query: 119 YANQWQNYYQPKH*SQKTYKFLQNSRTGSCTRNV 220
+ N+W+ + ++ F +N + GSCT+ +
Sbjct: 351 HRNKWKRMFCVLDADEQRLSFFENEKVGSCTQTL 384
>SB_40331| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-15)
Length = 150
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 83 STCSISVIFFNIYANQWQNYYQPKH*SQKTY 175
+T + FN A QW+ Y P + + TY
Sbjct: 39 ATADNGMALFNCIAGQWKRYVSPGNYAHLTY 69
>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
Length = 1183
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -1
Query: 273 FCL-WSDESKHFQHYCGRKTFRVQEPVRLF 187
+CL W+ S HF G F P +LF
Sbjct: 862 YCLRWNQHSLHFSKQVGASLFSQMRPSQLF 891
>SB_30782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = +2
Query: 119 YANQWQNYYQPKH*SQKTYKFLQNSRTGSCTRNV 220
+ N+W+ + ++ F +N + GSCT+ +
Sbjct: 80 HRNKWKRMFCVLDADEQRLSFFENEKVGSCTQTL 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,748,524
Number of Sequences: 59808
Number of extensions: 156133
Number of successful extensions: 357
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 328507322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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