Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1321
         (291 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS cla...    29   0.71 
At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family...    28   0.94 
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla...    26   3.8  
At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase, p...    26   3.8  
At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containi...    26   5.0  
At3g27750.1 68416.m03464 expressed protein                             25   6.6  

>At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 270 CLWSDESKHFQHYC 229
           C++ D S HFQHYC
Sbjct: 293 CVFDDISSHFQHYC 306


>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
           protein contains proline-rich protein domains,
           INTERPRO:IPR000694
          Length = 189

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 170 SSDFSAWVDNSFAIDWRRY*RI*H*CCRWIVSIDDTCSSYS*VA*NSDYFA 18
           S  FS+W +N FA+D          CC  IV+++  C  +  +   S +FA
Sbjct: 133 SQIFSSWAENDFALDKE--------CCEIIVNMNKRCYGHLHMMFKSHFFA 175


>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 853

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 270 CLWSDESKHFQHYCGRKTFRVQEPVRLFCKN 178
           CL+ + S+ F HYC        E VR+F KN
Sbjct: 39  CLYEEYSRRFVHYC------FIENVRIFAKN 63


>At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase,
           putative Similar to Arabidopsis 2A6 (gb|X83096) and to
           tomato ethylene synthesis regulatory protein E8
           (SP|P10967); EST gb|T76913 comes from this gene
          Length = 360

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 221 KRFVYRSRFDCFVKIYTSSDFSAWVDNSFA 132
           KRFVY S FD    +Y+SS    W D SFA
Sbjct: 127 KRFVYNSNFD----LYSSSSCVNWRD-SFA 151


>At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 444

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 3   LCQMDCKIIT--ILCYLAVARASIIDTDYPPA 92
           L QM C  +   ++CY  V +  I D DYP A
Sbjct: 265 LNQMKCDRVEPDLVCYTIVLQGVIADEDYPKA 296


>At3g27750.1 68416.m03464 expressed protein 
          Length = 222

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 39  CYLAVARASIIDTDYPPAASVSYSSI 116
           C LAV   S + T+YPP   V Y+ I
Sbjct: 97  CTLAVHVLSTLRTEYPPLDLVLYADI 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,077,376
Number of Sequences: 28952
Number of extensions: 104625
Number of successful extensions: 273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)