Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1318
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VJJ1 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_A2DIS9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_A0E399 Cluster: Chromosome undetermined scaffold_76, wh...    33   6.5  
UniRef50_Q4XW04 Cluster: Putative uncharacterized protein; n=2; ...    33   8.6  
UniRef50_Q4XEB3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q7VJJ1 Cluster: Putative uncharacterized protein; n=1;
           Helicobacter hepaticus|Rep: Putative uncharacterized
           protein - Helicobacter hepaticus
          Length = 1184

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 500 FNNNR*ATSKYTFLSKF*VTFIVLYYFYLQCFILNSITLFSIALLTLYERSLIYYIPYFL 679
           FN  +  T  Y  L  F +   VL+Y Y   F  N I +FS AL  +    +++ + +F+
Sbjct: 6   FNYLKSKTFLYILLICFALLLSVLFYIYSPLFAFNDIYIFSSALTRIQVLIVVWLLIFFI 65

Query: 680 Y 682
           +
Sbjct: 66  F 66


>UniRef50_A2DIS9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 412

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +2

Query: 500 FNNNR*ATSKYTFLSKF*VTFIVLYYFYLQCFILNSITLFSIALLTLYERSLIYYIPYFL 679
           F N+R  + KY    KF V    L  F++ C     +      LL L E SL+ ++ Y  
Sbjct: 301 FENDRQISLKYALAIKFNVIITQLLLFFVICISYAMLIEIRYTLLFLCEESLVIFVVYID 360

Query: 680 Y 682
           Y
Sbjct: 361 Y 361


>UniRef50_A0E399 Cluster: Chromosome undetermined scaffold_76, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_76,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 781

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -3

Query: 390 VFFFFENKLYCRLPNNKLFFKS-FYLKMI*T--LSTK*VICYFWTICWNQSFCLSNNYII 220
           + +FF   +Y ++PNN L + + +Y   I    +    ++  FW I W  S+ L N Y I
Sbjct: 456 ILYFFNTPIYNQIPNNNLLYNAGYYYNFIANGGIQILGILLIFWLI-WIISYILHNLYQI 514

Query: 219 HS 214
           ++
Sbjct: 515 NN 516


>UniRef50_Q4XW04 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 530

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 530 YTFLSKF*VTFIVLYYFYLQCFILNSITLFSIALLTLYERSLIYYIPYFLY 682
           Y FL  F +TF +L++ Y     +  IT F + ++ L   + I+ +P+  Y
Sbjct: 17  YIFLYIFHITFFILHFSYYIFLYIFHITFFILHVMRLSIYNYIFVMPFIFY 67


>UniRef50_Q4XEB3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 103

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +2

Query: 530 YTFLSKF*VTFIVLYYFYLQCFILNSI-----TLFSIALLTLYERSLIYYIPYF 676
           +TF +K  V   ++Y FYLQ +I   I      +FS   +T+Y++ L  YI +F
Sbjct: 49  FTFFTKEYVILKIIYNFYLQFYINMYIQIMCNIIFSFDFITIYKQFLYIYILWF 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,603,047
Number of Sequences: 1657284
Number of extensions: 9994176
Number of successful extensions: 18627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18604
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)