Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1318
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.4  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 117 DKTDGTLHFIDTAV-LTTCHIIY 182
           +K DGTL  IDT + +T   +++
Sbjct: 76  NKNDGTLTIIDTGIGMTKADLVH 98


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 569 LYYFYLQCFILNSITLFSIALLTLYERSLIYYIPYFLY 682
           +YYFY   FI+ +I L    +L +      +Y  + L+
Sbjct: 212 IYYFY-SAFIIFTIHLLFYCVLIILLCIYYFYYAFILF 248



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/43 (16%), Positives = 18/43 (41%)
 Frame = +2

Query: 554 VTFIVLYYFYLQCFILNSITLFSIALLTLYERSLIYYIPYFLY 682
           +  + +YYFY    +     L  + +   Y   L++   + ++
Sbjct: 233 IILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIF 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,251
Number of Sequences: 336
Number of extensions: 3222
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)